Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g2992 ATGTATACAAAAAAAAGTAGTGGATATGACATTTTATTATATTTGGCCCACACTTCATGTTTTTGTGCTTGTTACGCTCAAATGAGTCCATCTTTTGATGCTATTAGCAAGATAGTTCCTCCAAGAGAGGCTTGGAGGCTTAAAGTGAGGGTAATTAGGGCTTGGATTGTTCCAAGCTTTGGAAATCCAGATTCTCCAAATTCAATGGAGCTCATTTTGGTGGATGAAAATTCAAACAAAATTCAGGCCACTATAAGGAAGCAGCTTATCAACAGGTTTAAAGATAATATTATTGAAGGGAATTGCTACAAGATGTGCTATTTCTCTGTTGTTCCAAATCATGGCTCTTATAGAGCTACAAAACATGAGTTTAAGCTTACATTCCTCTTCCGAACAATAGTAACAACTTTACCAGATGATATCATACCAAGAGTCTGTTTTACTCTATATCCTTTTGAGGAGATATTGCAAATGAGTCAAGATCATGATTATTTAGTTGATGTTATTGGGTTGCTGACTTTAGTTGGAGAGGAAAAAAGTTATGATAAAGATGGAAAAACAATCAAGATGGTTGTTGTGGAGCTTTCTTCTCAAAAGTGCGCCCTGTTTGGAGAATATGTGGATCAACTAAATCATTTTCTTTCTTCTGGTTATGTTGAACAACCAGTAGTGATTCTTCAACTTGCCAAAGTTAAGCTTTTTCGAGGGCAACCTGGGTTACAAAATGTCATGAAAGCAACAAAAATATATCTTAATCCTGACTTGGCAGCTGTTGTTGATTTCAGGAAGAGCGTGGTAGAACAAGGGATAAATGGGACCCAGCCACTGTTTATTGCTAATGAAGGAAAAACTATCTCATTGGAGGATGACTTCATGAGGTTGACTAAGAAATCTACAATAGATGAGTTGCAAGAAAACAAGGAGGATGGAACCTTTGTCATTTTAGGTACTATCACTGATGTTGTAGAAGAGGGGTGCTGGTGGTATTCTACCTGTGTTTGTGGGAAGACAATACATCCTGAATCTGGTGTTTACTTTTGTGATATGTGCATGCATCATGTGACAAATGTGATCCCAAGGTATAGGCTCAAGGTAGTTGTATCAGATGAAACTGGACAGGGTATATTTGTCCTCTTTGATCGTGAAACAACCTACTTGGTTAAAAAAACATGTGCTGACCTATTTAATGAGGTACATAAAGATTCAAAGGTTCTCTGTGGGGATGACTACCCTATCATTTTTAGAAATTTGGAGGGTAAAAAAGTCTTGCTGAAAGTGGATACTAAGTCTCTTGGTGTTGATAGATATTTTGGAACTTTTCGTGTGAAGAGGATTTGTGATGATGCTGCAATTATTTCAATGTTTGAACTTGCTCAGACTGAGATAACACCTTTGAAGGATGCACCTGTTCCTGTGTTTGGTCCTGAGTTGGGTGAAACTTCTAATACAAAATGTTTAGAGAATACTGTCATGTCATCTTTTCTTCAAAAAGAAGCAAATGTTGCTGGACTTGATGATATACACTTAGATATGGAAGGTGTTAAGGAGGTTGATATTCAAGATCATTCTGTTGATAGTGATGAAAATGTAGTGCTGTCGGATGATATTGGCTCACTTATTCGGTCTGATGTTGATGAAACTCAGGATTTGCTCTCACACCTTTTAGATGACTCAAGGAAAGTTAATGTGCCTAATGTTGTTCCCAAAGATGCAGTATTTTTAAAGGTGAAGAGGAATCTTGAGGCTGATTTTGATAAGGAACTTGAGGATATTGTTGCTCATTGCTCTAAAATAATCAAGATTGAAGATAGTTAA 1815 0.3686 MYTKKSSGYDILLYLAHTSCFCACYAQMSPSFDAISKIVPPREAWRLKVRVIRAWIVPSFGNPDSPNSMELILVDENSNKIQATIRKQLINRFKDNIIEGNCYKMCYFSVVPNHGSYRATKHEFKLTFLFRTIVTTLPDDIIPRVCFTLYPFEEILQMSQDHDYLVDVIGLLTLVGEEKSYDKDGKTIKMVVVELSSQKCALFGEYVDQLNHFLSSGYVEQPVVILQLAKVKLFRGQPGLQNVMKATKIYLNPDLAAVVDFRKSVVEQGINGTQPLFIANEGKTISLEDDFMRLTKKSTIDELQENKEDGTFVILGTITDVVEEGCWWYSTCVCGKTIHPESGVYFCDMCMHHVTNVIPRYRLKVVVSDETGQGIFVLFDRETTYLVKKTCADLFNEVHKDSKVLCGDDYPIIFRNLEGKKVLLKVDTKSLGVDRYFGTFRVKRICDDAAIISMFELAQTEITPLKDAPVPVFGPELGETSNTKCLENTVMSSFLQKEANVAGLDDIHLDMEGVKEVDIQDHSVDSDENVVLSDDIGSLIRSDVDETQDLLSHLLDDSRKVNVPNVVPKDAVFLKVKRNLEADFDKELEDIVAHCSKIIKIEDS* 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g2992 604 Pfam Replication factor-A C terminal domain 314 429 IPR013955 -
Amo03g2992 604 Gene3D - 287 460 IPR012340 -
Amo03g2992 604 CDD RPA1_DBD_B_like 167 265 - -
Amo03g2992 604 SUPERFAMILY Nucleic acid-binding proteins 147 265 IPR012340 -
Amo03g2992 604 CDD RPA1_DBD_C 297 443 IPR013955 -
Amo03g2992 604 SUPERFAMILY Nucleic acid-binding proteins 31 140 IPR012340 -
Amo03g2992 604 SUPERFAMILY Nucleic acid-binding proteins 298 459 IPR012340 -
Amo03g2992 604 PANTHER REPLICATION FACTOR A 1, RFA1 47 395 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Amo03g2992 604 Gene3D - 141 273 IPR012340 -
Amo03g2992 604 Pfam Domain of unknown function DUF223 70 165 IPR003871 -
Amo03g2992 604 CDD RPA1_DBD_A_like 46 134 - -
Amo03g2992 604 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 47 395 - -
Amo03g2992 604 Gene3D - 33 139 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g2992 Amo-Chr3 122483550 122487723 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g2992 35 372 Core DNA Replication Machinery Family AT2G06510 21.111 9.50e-13 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g2992 - - ahf:112791275 1050.04