Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g2963 ATGGAACGAAATGGTGACGGAAGGGTTCAAGATTCAGAGCCCCCAACTCCACATTCTGTTCTAAAGATGGGATTGAGGGATCGAACCAGCAGCATGGAGGATCCAGATGGAACATTAGCMAGCGTTGCCCAGTGCATTGAACAACTGCGCCAGAGCTCATCTTCWGCRCAYGAGAAAGAGTATTCCTTAAGGCAGTTATTGGAGCTTATAGAGATGCGAGAAAATGCTTTTAGTGCTGTTGGATCTCACTCTCAAGCAGTTCCAGTACTTGTTTCCCTTCTTCGGTCGGGTTCATTGAATGTAAAGATACAGGCAGCAACTGTCCTGGGCWCCCTTTGTAAAGAAAATGAGCTGAGGGTGAAAGTCTTGCTTGGAGGATGCATTCCTCCGTTGCTTGGTCTTCTAAARTCTAGTTCCACRGAAGGGCAAATTGCTGCTGCCAAGACTATTTATGCTGTCTCTCAAGATGGTGTGAAAGATCATGTTGGTTCGAAAATATTTTCAACTGAAGGTGTTGTACCAGTGCTCTGGCAGCAGCTGCAGAAGGGCTTGAAATCAGCAAATGTAGTCGAAAGTTTATTGACTGGAGCATTGAAAAATCTCGCCAGCAATACYGAGGGATTCTGGGGTGCAACCATGCAAGCTGGAGGAGTGGACATATTAGTCAAGTTACTGGCAACAGGACAGCCTGGCACCTTAGCTAATGTGTGYTTTTTGCTTGCTTCTGTTATGATGGAGGATGCATCTGCATGCTCAAAGGTGTTATCAGCAGACGTGACAAAACAACTCCTCAAACTATTAGGCCCTGGTAATGATGACTCTGTCAGGGCTGAAGCAGCTGGTGCTCTTAAGTCTCTATCTTCCCAGTGCAAAGAGGCAAGAAGAGAGATAGCAAATGCTAATGGTATTCCTGCATTAATCAATGCCACAATAGCTCCTTCCAAAGAGTTCATGCAAGGTGAGTGTGCTCAAGCATTACAGGAGAATGCAATGTGTGCTCTAGCAAACATATCTGGTGGTTTGTCTTTTGTCATATCTAGCCTTGGTCAAAGCCTTGACTCGTGCACCACACCTACCCAGGTTGCTGACACATTAGGAGCATTAGCTTCAGCTCTCATGATATATGATAACAAGGCAGAATCTACTAGAGCATCAGATCCTTCAGTGGTTGAACAAACATTACTCAAACAGTTTAAACCTCGCTTGCCMTTCCTTGTTCAGGAACGGACCATTGAAGCKCTTGCTAGTTTGTATGGAAATCCCATACTCTCGCTTAAACTTGCGAATTCTGGTGCAAAACATTTGCTTGTTGGTTTGATAACAATGGCTTCCAATGAAGTGCAAGATGAGCTCACAAAAKCTCTCTTGACCTTGTGCAATGGTGAAGCCAGTCTATGGCGTGCAATTCAAGGCCGTGAAGGAATTCAACTATTGATATCTCTTCTTGGGCTTTCATCAGAACAGCAGCAAGAATGTGCAGTTGCCTTGCTTTGCCTTCTAACTARTGAAAATGATGAAAGTAAATGGGCCATTACTGCTGCTGGCGGTATACCTCCACTTGTTCAAATTCTAGAGACAGGATCTGCAAAAGCAAAGGAAGACTCAGCAACCATCCTTAAGAACTTGTGCAACCACAGTGAAGACATACGAGCATGTGTCGAAAGTGCCGATGCTGTTCCTGCATTGTTGTGGCTATTGAAGAATGGAAGCCCAAATGGGAAGGATATTGCAGCAAAGACATTAAATCATTTAATTCATAAATCTGATACTACGACTATCAGTCAGCTTACAGCATTATTGACTAGTGATCAGCCTGAATCTAAGATCTACATTCTGGATGCTTTGAGAAGTATGCTTTCTGTTGCACCTCTTAGTGACATTCTACGTGAAGGTAGTGCTCCTAGTGATGCATTTGATACCATGATAGCATTGCTGAGTTCTACCAAGGAAGAAACTCAGGCAAAGTCAGCATCAGCTCTGGCAGGAATTTTTGAATCAAGGAAAGACATTCGTGAAAGCAGCATTGCTATTAAAGCTCTTAGTTCAGCCCTGAAATTGATTAATGTTGAATCTGAAAGTATCCTGATGGAGTCCTCACACTGCCTGGCTTCAATATTTCTATCCATCAAAGAAAACAGGGATGTAGCTGCTATTGCTAGACCTGCATTATCCCGCTTAGTTGCACTCGCTAACTCTTCAGTTTTGGAAGTTGCAGAGATGGCAACATGTGCTGTGGCAAACATTATTTTGGATAGTGAAATTGCAGAAAAAGCTGTTACAGAAGAAGTTATCTTGCCTGCCACCAAAGTATTACGTGAAGGCACAATCTCTGGAAAAGCCCATGCAGCTGCAGCAATTGCTCGCCTCTTACACTCCCGGAAAGTTGATTCTGACGTAACCGATTGCGTAAATCGTGCTGGCACTGTTCTTGCATTAGTTTCTTTCTTAGATTCTGCTATTAGTGGATCTATTGCCACATCAGAGGCTCTAGAAGCTCTTGCCATTCTGTCCAGGTCAGAAGAGTCCAGCACACASAAYAAATCGGCTTGTGCAGTTTTGGCTGAATTCCCAAAGAGCATAAGTCCAATAGTCTTATCTATTGTTGATTCAGCACCAATGTTGCAGGATAAAGCTATTGAGATATTGTCTCGATTATGCAAGGATCTACCTATTGTTTTAGGTGACAATGTTGTTACTGCATCTGGATGTATATCTTCAATAGCTAAGAGAATAAGTAGTTCCACAAATGTGAAGGTCAAAATTGGGGGAGCTGCACTTCTAATTTCTGCAGCAAAAGCAAATCATCAGAGACTTATGGAGGATCTCAATTCATCAAACTTGTGTGCTAATCTTATTCGGTCTCTAGTTGATATTTCTGCAGAGCCTTCTCTGGGTAATCAAGGTGATGACAAGAAGGAGCTAATCAGCATATGCAGGAGTACACAAGAAGAGGCCAATGRTGGTGAATCAAACACTGGCACGGCCATTATATCTGGTGCTGACTTAGCTATATGGTTATTATCTATTCTTGCTTGTCATGATGAAAAAAGTAGAAGTATCATAATGGAGGCTGGAGCAATTGATGTTCTAACTGACAGGATCTCAAATTGTTTCTCACAATATTCCCAGATTGACTACAAAGAAGATAGCAGCATGTGGATTTGTGCTTTGTTGTTAGCAATACTATTTCAAGATAGAGATATCATACGCACACATGCAACCATAAAATCTGTACCAGCACTTGCCAGTTTATTGAAGTCAGAAGAATTAGCAAACAAATATTTTGCTGCACAAGCAATAGCTAGCCTTGTCTGTAACGGTAGCAGGGGAACGCTTCTGTCTGTAGCAAATTCTGGTGCAGCTGGTGGACTTATCTCCTTGCTTGGCAGTGCTGATACTGATATTCATGATCTTCTGGAATTGTCAGAAGAATTTTTGTTGGTGCGTTATCCTGATCAAGTTGCTCTTGAGAGGTTGTTTAGAGTTGATGATATAAGAGTTGGTGCCACTTCTCGGAAGGCAATGCCTGCCCTTGTTGATCTGCTCAAACCAATTCCAGATCGCCCAGGAGCCCCATTTTTAGCACTYGGGCTTTTGATTCAKCTTGGTAGAGATTGCCCATCCAATAAGCTTATAATGGTAGAGGCTGGAGCCTTAGAAGCACTTACGAAGTATCTTTCACTAAGTCCACAAGATGCAACTGAAGAAGCTGCTACAGATCTRCTAGGAATTCTGTTTAGCACTGCTGATATACGAAAACATGAGTCAGCATTCGGTGCTGTTGCTCAACTCGTTGCTGTCCTACGGCTAGGAGGAAGAGCTGCCAGGTTAAGTGCTGCAAAAGCCTTGGAAAGTTTATTCACTGCTGATCACATTAGAAATGCAGAGATGGCTCGMCAAGCTGTTCAACCTTTGGTGGAGATTCTTAGTACTGGTWCAGAGAGAGAGCAGCATGCTGCAATTGCTGCATTGGTTCGGTTACTGAATGAAAACCCATCAAAAGCACTTGCTGTTGCAGATGTTGAGATGAATGCAGTGGATGTTCTTTGCAGGATCCTTTCATCGGATTGTTCRGTGGAACTCAAGGGGGATGCTGCTGAATTATGTTGTGCACTTTTTGGAAAYACAAGGATTCGATCCACAATGGCTTCTGCCCGCTGTGTCGAACCACTAGTCTCTCTCCTTGTAACTGAGTTTAGTCCTGCTCAGCTTTCAGTTGTTCGGGCATTGGATAGGCTTGTAGATGATGAGCAACTGGCTGAACTAGTTGCTGCACATGGTGCAGTTGTTCCTCTTGTCGGCCTACTGTATGGTCGGAACTATTTACTRCATGAGGCCATTTCCAGAGCTCTAGTCAAGTTAGGAAAAGACAGGCCTGCTTGTAAAATGGAAATGGTGAAAGCTGGAGTGGTTGAAAGCATACTTAGCATCKTACACGAAGCACCYGATTATCTATGTGCAGCGTTTGCAGAATTGTTGCGTATATTGACCAATAATGCTACCATAGCTAAAGGACAATCTGCTGCCAAAGTGGTTGAACCCTTGTTTATGTTGCTGACAAGACAAGAATTTATGCCCGAAGGWCTGCATAGCACATTGCAGGTWTTGGTTAATATCTTGGAACATCCACARTGTCGTGCAGACCATACATTGAGTTCTCGCCAAGTTATTGAACCACTTATCCCCTTGCTCGATTCTCCAATACCAGCAGTGCAACAGCTGGCTGCTGAGCTTCTTTCGCATCTACTTGTAGAAGAACACCTTCAGAAGGATCCRGTGACRCAGCAAGTAATTGGTCCCCTTATACGAGTTCTTAGTTCTGGTATACACATATTGCAGCAGAGAGCTGTAAAGGCTCTAGTTAGTATTGCTCTAACATGGCCAAATGAAATTGCCAAAGAGGGTGGYGTTGTTGAAATTTCCAAAGTAATATTGCARGCCGATCCTTCCATTCCRCATGCCTTATGGGAGTCTTCTGCCTCRGTTTTGTCGTGTATTCTGCAATTTAGTTCTGAATTCTACTTGGAAGTGCCTATTGCTGTGTTGGTAAGGTTGCTGCGGTCTGGCTCAGAGAGCACAGTTATTGGTGCATTAAATGCTCTGCTGGTGTTGGAAAGTGATGATGGAACTAGTGCAGTAGCTATGGCTGAAAGTGGTGCCATAGAGGCACTCTTGGAGCTCCTAAGGTCTCATCAGTGTGAGGAAACTGCTGCTAGACTCTTAGAAGTATTGCTGAACAATGTAAAGATCCGAGAAACAAAAGTCACTAAATCAGCCATTGTACCATTATCCCAGTACCTTTTGGATCCACAAACTCAAGCACAACAGGCAAGGTTATTGGCRACTTTAGCTCTTGGGGATCTGTTTCAGAATGAAGGTCTTGCTCGAACAGCTGATGCAGTTTCTGCATGTCGTGCTTTAGTGAATGTTCTCGAAGAACAACCGACAGAAGAAATGAAAGTTGTGGCCATCTGTGCTTTGCAAAATCTTGTGATGTATAGTCGMTCGAATAGGAGAGCTGTTGCAGAGGCTGGTGGTGTTCAGGTTGTATTGGATCTGATAAGTTCAAGTGAGCCAGATACATCCATTCAGGCTGCAATGTTCATTAAACTTCTCTTCTCAAATAATACAATTCAAGAGTATGCTTCCAGTGAAACAGTCAGAGCAATAACTGCTGCTATTGAAAAAGATTTATGGGCCTCTGGTACCGTGAATGAGGAGTACTTGAAAGCCTTAAATTCTCTCTTCAGCAACTTCCCACGACTGAGAGCAACTGAACCAGCAACACTTAGCATCCCCCATCTGGTTACATCCTTAAAGACAGGCTCAGAGGCTTGTCAGGAGGCTGCTTTGGATGCACTTTTTTTACTACGACAAGCTTGGTCGGCATGCCCTGCCGAAGTCTCAAGAGCTCAGTCAATTGCAGCTGCCGATGCTATTCCATTCCTGCAGTACTTGATCCAGTCCGGCCCACCTCGGTTTCAGGAGAAGGCAGAATTTCTGTTGCAGTGTTTGCCGGGGACATTGGTGGTGATCATCAAGCGTGGTAACAATATGAAGCAGTCCGTCGGAAACCCAAGTGTCTACTGTAAACTTACATTGGGAAACACCCCACCCAGGCAAACAAAGGTGGTGTCAACTGGCCCTAATCCAGAATGGGATGAGAGCTTTTCATGGTCCTTTGAGAGTCCTCCAAAAGGCCAGAAGCTTCACATTTCATGCAAAAACAAGAGCAAAGTGGGAAAGAGTAAATTTGGAAAAGTAACAATACAAATTGATCGTGTGGTAATGCTTGGAGCAGTAGCTGGAGAGTATGCTCTATTGCCTCAAAGTAAAAGTGGGCCCCCAAGGAATCTAGAAATAGAATTTCAGTGGTCTAACAAGCCCATTGTTAATGCTGCTGAAGCTGCTGCTGCTGCAGCTGCTGAGTAA 6432 0.4347 MERNGDGRVQDSEPPTPHSVLKMGLRDRTSSMEDPDGTLASVAQCIEQLRQSSSSAHEKEYSLRQLLELIEMRENAFSAVGSHSQAVPVLVSLLRSGSLNVKIQAATVLGXLCKENELRVKVLLGGCIPPLLGLLKSSSTEGQIAAAKTIYAVSQDGVKDHVGSKIFSTEGVVPVLWQQLQKGLKSANVVESLLTGALKNLASNTEGFWGATMQAGGVDILVKLLATGQPGTLANVCFLLASVMMEDASACSKVLSADVTKQLLKLLGPGNDDSVRAEAAGALKSLSSQCKEARREIANANGIPALINATIAPSKEFMQGECAQALQENAMCALANISGGLSFVISSLGQSLDSCTTPTQVADTLGALASALMIYDNKAESTRASDPSVVEQTLLKQFKPRLPFLVQERTIEALASLYGNPILSLKLANSGAKHLLVGLITMASNEVQDELTKXLLTLCNGEASLWRAIQGREGIQLLISLLGLSSEQQQECAVALLCLLTXENDESKWAITAAGGIPPLVQILETGSAKAKEDSATILKNLCNHSEDIRACVESADAVPALLWLLKNGSPNGKDIAAKTLNHLIHKSDTTTISQLTALLTSDQPESKIYILDALRSMLSVAPLSDILREGSAPSDAFDTMIALLSSTKEETQAKSASALAGIFESRKDIRESSIAIKALSSALKLINVESESILMESSHCLASIFLSIKENRDVAAIARPALSRLVALANSSVLEVAEMATCAVANIILDSEIAEKAVTEEVILPATKVLREGTISGKAHAAAAIARLLHSRKVDSDVTDCVNRAGTVLALVSFLDSAISGSIATSEALEALAILSRSEESSTXNKSACAVLAEFPKSISPIVLSIVDSAPMLQDKAIEILSRLCKDLPIVLGDNVVTASGCISSIAKRISSSTNVKVKIGGAALLISAAKANHQRLMEDLNSSNLCANLIRSLVDISAEPSLGNQGDDKKELISICRSTQEEANXGESNTGTAIISGADLAIWLLSILACHDEKSRSIIMEAGAIDVLTDRISNCFSQYSQIDYKEDSSMWICALLLAILFQDRDIIRTHATIKSVPALASLLKSEELANKYFAAQAIASLVCNGSRGTLLSVANSGAAGGLISLLGSADTDIHDLLELSEEFLLVRYPDQVALERLFRVDDIRVGATSRKAMPALVDLLKPIPDRPGAPFLALGLLIXLGRDCPSNKLIMVEAGALEALTKYLSLSPQDATEEAATDLLGILFSTADIRKHESAFGAVAQLVAVLRLGGRAARLSAAKALESLFTADHIRNAEMARQAVQPLVEILSTGXEREQHAAIAALVRLLNENPSKALAVADVEMNAVDVLCRILSSDCSVELKGDAAELCCALFGNTRIRSTMASARCVEPLVSLLVTEFSPAQLSVVRALDRLVDDEQLAELVAAHGAVVPLVGLLYGRNYLLHEAISRALVKLGKDRPACKMEMVKAGVVESILSIXHEAPDYLCAAFAELLRILTNNATIAKGQSAAKVVEPLFMLLTRQEFMPEGLHSTLQVLVNILEHPQCRADHTLSSRQVIEPLIPLLDSPIPAVQQLAAELLSHLLVEEHLQKDPVTQQVIGPLIRVLSSGIHILQQRAVKALVSIALTWPNEIAKEGGVVEISKVILQADPSIPHALWESSASVLSCILQFSSEFYLEVPIAVLVRLLRSGSESTVIGALNALLVLESDDGTSAVAMAESGAIEALLELLRSHQCEETAARLLEVLLNNVKIRETKVTKSAIVPLSQYLLDPQTQAQQARLLATLALGDLFQNEGLARTADAVSACRALVNVLEEQPTEEMKVVAICALQNLVMYSRSNRRAVAEAGGVQVVLDLISSSEPDTSIQAAMFIKLLFSNNTIQEYASSETVRAITAAIEKDLWASGTVNEEYLKALNSLFSNFPRLRATEPATLSIPHLVTSLKTGSEACQEAALDALFLLRQAWSACPAEVSRAQSIAAADAIPFLQYLIQSGPPRFQEKAEFLLQCLPGTLVVIIKRGNNMKQSVGNPSVYCKLTLGNTPPRQTKVVSTGPNPEWDESFSWSFESPPKGQKLHISCKNKSKVGKSKFGKVTIQIDRVVMLGAVAGEYALLPQSKSGPPRNLEIEFQWSNKPIVNAAEAAAAAAAE* 2144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g2963 2143 Gene3D - 1673 1778 IPR011989 -
Amo03g2963 2143 CDD C2 2009 2099 - -
Amo03g2963 2143 MobiDBLite consensus disorder prediction 1 37 - -
Amo03g2963 2143 Gene3D - 1779 2005 IPR011989 -
Amo03g2963 2143 Gene3D - 28 392 IPR011989 -
Amo03g2963 2143 Gene3D - 827 1147 IPR011989 -
Amo03g2963 2143 Pfam Armadillo/beta-catenin-like repeat 504 543 IPR000225 GO:0005515
Amo03g2963 2143 SUPERFAMILY ARM repeat 1163 1520 IPR016024 -
Amo03g2963 2143 SUPERFAMILY ARM repeat 638 1135 IPR016024 -
Amo03g2963 2143 Gene3D - 1154 1377 IPR011989 -
Amo03g2963 2143 SUPERFAMILY ARM repeat 40 791 IPR016024 -
Amo03g2963 2143 Pfam C2 domain 2007 2097 IPR000008 -
Amo03g2963 2143 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2007 2113 IPR035892 -
Amo03g2963 2143 Gene3D - 1378 1672 IPR011989 -
Amo03g2963 2143 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 515 557 IPR000225 GO:0005515
Amo03g2963 2143 Gene3D C2 domain 2006 2133 IPR035892 -
Amo03g2963 2143 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 5 2128 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Amo03g2963 2143 ProSiteProfiles C2 domain profile. 1988 2105 IPR000008 -
Amo03g2963 2143 PANTHER CELLULOSE SYNTHASE-INTERACTIVE PROTEIN 5 2128 - -
Amo03g2963 2143 SUPERFAMILY ARM repeat 43 376 IPR016024 -
Amo03g2963 2143 SMART C2_3c 2008 2104 IPR000008 -
Amo03g2963 2143 SUPERFAMILY ARM repeat 1557 2003 IPR016024 -
Amo03g2963 2143 SMART arm_5 711 750 IPR000225 GO:0005515
Amo03g2963 2143 SMART arm_5 546 586 IPR000225 GO:0005515
Amo03g2963 2143 SMART arm_5 1290 1329 IPR000225 GO:0005515
Amo03g2963 2143 SMART arm_5 247 288 IPR000225 GO:0005515
Amo03g2963 2143 SMART arm_5 1416 1456 IPR000225 GO:0005515
Amo03g2963 2143 SMART arm_5 115 155 IPR000225 GO:0005515
Amo03g2963 2143 SMART arm_5 463 502 IPR000225 GO:0005515
Amo03g2963 2143 SMART arm_5 73 114 IPR000225 GO:0005515
Amo03g2963 2143 SMART arm_5 1375 1415 IPR000225 GO:0005515
Amo03g2963 2143 SMART arm_5 1834 1874 IPR000225 GO:0005515
Amo03g2963 2143 SMART arm_5 504 544 IPR000225 GO:0005515
Amo03g2963 2143 SMART arm_5 290 339 IPR000225 GO:0005515
Amo03g2963 2143 SMART arm_5 1707 1746 IPR000225 GO:0005515
Amo03g2963 2143 SMART arm_5 1546 1584 IPR000225 GO:0005515
Amo03g2963 2143 SMART arm_5 1206 1247 IPR000225 GO:0005515
Amo03g2963 2143 SMART arm_5 796 838 IPR000225 GO:0005515
Amo03g2963 2143 Gene3D - 595 818 IPR011989 -
Amo03g2963 2143 Coils Coil 276 303 - -
Amo03g2963 2143 Gene3D - 395 594 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g2963 Amo-Chr3 121649734 121659101 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g2963 249 607 U-box Gene Family AT3G46510 25.543 1.49e-06 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g2963 - - gmx:100794002 3550.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3858 13 129676743 129686118 Amo03g2963 03 121649734 121659101 hybridization
Amo03g2963 03 121649734 121659101 Amo20g1221 20 24636413 24646325 PCT