Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g2949 ATGAATTCTCCAACTTCACACTTTGTTCCCCCAAGAAGGATGGGAGTATATGATCCAATCCACCAGATTAGTATGTGGGAAGAGAATTTCAGAAGTAATGTTAGTTTAAGTGCATCAACGCTCTTAATTGATGATGCGGAGATTAAGTTTGACAATCAGTCAGAATATGCTTCTCATGGAATACCAGGAACATCTAAACAATATGACCAAGAAGCTAACAGACTTGCTGATAAGATACAGAGACGCCTTGCACAAAATCGAGAGGCTGCTCGTAAGAGTCGTTTGCGCAAAAAGGCCTATGTACAGCAACTAGAATCATGTCGCGTGAAGCTAATGCAGTTAGAGCAAGAGGTTGATCATGCAAAACAACAGGGATTACATATTGGTGGTACTGGATTGGGTTCTAATAGTTTGGGTTTTGCTGCCTCTTTAAATTCAGGAATAGCAAACTTCGAGATGGAGTATGGACGTTGGCTAGAAGAGCGGAATAGACATACCTTGGCACTTAGAAATGCTTTAAGTTCTCATATGGGTGACGTAGAACTCGGAGAACTTGTAGATGGCACAATGAACCACTATTTTAAACTCTTTGGCATGAAATCTGCTGCTGCAAAAGCTGATGCTTTCTACGTTATGTCCGGCATGTGGAAATCATCAGCCGAACGATTTTTCTTCTGGATTGGAGGCTTTCGCCCCTCAGAAATTCTAAAGATTCTGGTACCTAGGATTGAAACCATGACAGAGCAACAAAGGTCAGACATAAGCAACCTTGGAAAATCTTGTCAGCAAGCAGAAGATGCTCTTTCACAAGGCATGGACAAACTTCAACAAATGGTTTCAGAATCTGTAGCAGCAGGACAACTTGAAGAACAAACTAACACTCCAAACATGTCTACTGCAATGGAGAGATTGGCAGCTCTAGTGAGCTTTGTGAACCAAGCTGATCATCTGCGACAGGAAACATTGCTGCAAATGTCTCGAATACTTACAAAACGGCAGGCTGCGAGGTGGCTTCTTGCCTTGGGGGAATATTTTCAACGCCTGCAAGCTTTGAGCTCTTTCTGGGCTAATCGTCCTTCCAAACCTGCTGAGTGCTTAATACCTTAG 1107 0.4264 MNSPTSHFVPPRRMGVYDPIHQISMWEENFRSNVSLSASTLLIDDAEIKFDNQSEYASHGIPGTSKQYDQEANRLADKIQRRLAQNREAARKSRLRKKAYVQQLESCRVKLMQLEQEVDHAKQQGLHIGGTGLGSNSLGFAASLNSGIANFEMEYGRWLEERNRHTLALRNALSSHMGDVELGELVDGTMNHYFKLFGMKSAAAKADAFYVMSGMWKSSAERFFFWIGGFRPSEILKILVPRIETMTEQQRSDISNLGKSCQQAEDALSQGMDKLQQMVSESVAAGQLEEQTNTPNMSTAMERLAALVSFVNQADHLRQETLLQMSRILTKRQAARWLLALGEYFQRLQALSSFWANRPSKPAECLIP* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g2949 368 Pfam Seed dormancy control 168 240 IPR025422 GO:0006351|GO:0043565
Amo03g2949 368 PANTHER BZIP FAMILY TRANSCRIPTION FACTOR 1 363 - -
Amo03g2949 368 Coils Coil 97 124 - -
Amo03g2949 368 ProSiteProfiles DOG1 domain profile. 148 358 IPR025422 GO:0006351|GO:0043565
Amo03g2949 368 Gene3D - 76 127 - -
Amo03g2949 368 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 81 96 IPR004827 GO:0003700|GO:0006355
Amo03g2949 368 Pfam bZIP transcription factor 77 112 IPR004827 GO:0003700|GO:0006355
Amo03g2949 368 SUPERFAMILY Leucine zipper domain 78 119 IPR046347 GO:0003700|GO:0006355
Amo03g2949 368 PANTHER TRANSCRIPTION FACTOR TGA9 1 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g2949 Amo-Chr3 121404282 121409309 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g2949 1 363 Calmodulin-binding Proteins AT5G65210 62.060 5.40e-168 472
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Amo03g2949 DOG1 1.3e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g2949 K14431 - gmx:100780003 519.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3849 13 129246939 129251925 Amo03g2949 03 121404282 121409309 hybridization
Amo03g2949 03 121404282 121409309 Amo20g1238 20 25421147 25425270 PCT
Amo03g2949 03 121404282 121409309 Amo10g0817 10 12962905 12966946 PCT