Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g2913 ATGGCGCCGAAGCAGAGAACAGCGAGGAAGGTGAGCCAGAACCCCGAACTGATTAGGGGAATCGGAAAGTACTCGAGGTCCAAGATGTACCACAAGAGGGGACTCTGGGCCATCAAGGCCAAAAAAGGCGGCGTTTTACCTCGCCACGATCCCAAACCTAAGCCTCAAGCACCTTCTCAGAAGCCTGCCAAATTTTATCTTGCTGATGACGTCAAAAAACCCTTTGTCAACAAGCACAAGCCCAAACCTACCAAGCTCAGGGCTAGCATTACTCCTAGAACAGTGCTGATTCTTCTAGCCGGCAGATTTAAGGGAAAGAGGGTAGTGTTCCTGAAGCAGCTTCCTTCGGGCTTGCTTCTTGTTACTGGCCCTTTCAAAATCAATGGAGTGCCTTTGAGACGTGTGAACCAATCCTACGTCATTGGTACATCAACCAAAGTAGATGTCTCTGGTGTTAATGTGGATAAATTTGATGACAAATATTTTGCAAAGGAAGCTAAGAAGAAGAAGAAAAAGGAAGAGGGAGAGTTCTTTGAATCAGAGAAAGAGGAGAAGAAAGTGCTGCCCCAGGAGAAGAAAGATAATCAGAAAATGGTGGACTCTGCTTTGTTAAAAGCCATTGAAAGCGTTCCAGATTTGAAGGCATATATTGGTGCTAGGTTTTCCCTCAAGCAAGGCATGAAGCCTCATGAGCTAGTTTTTTAA 705 0.4553 MAPKQRTARKVSQNPELIRGIGKYSRSKMYHKRGLWAIKAKKGGVLPRHDPKPKPQAPSQKPAKFYLADDVKKPFVNKHKPKPTKLRASITPRTVLILLAGRFKGKRVVFLKQLPSGLLLVTGPFKINGVPLRRVNQSYVIGTSTKVDVSGVNVDKFDDKYFAKEAKKKKKKEEGEFFESEKEEKKVLPQEKKDNQKMVDSALLKAIESVPDLKAYIGARFSLKQGMKPHELVF* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g2913 234 MobiDBLite consensus disorder prediction 173 193 - -
Amo03g2913 234 PANTHER 60S RIBOSOMAL PROTEIN L6 1 234 - -
Amo03g2913 234 Pfam Ribosomal protein L6e 127 234 IPR000915 GO:0003735|GO:0005840|GO:0006412
Amo03g2913 234 MobiDBLite consensus disorder prediction 41 62 - -
Amo03g2913 234 PANTHER 60S RIBOSOMAL PROTEIN L6 1 234 IPR000915 GO:0003735|GO:0005840|GO:0006412
Amo03g2913 234 SUPERFAMILY Translation proteins SH3-like domain 89 174 IPR008991 -
Amo03g2913 234 Coils Coil 163 183 - -
Amo03g2913 234 CDD KOW_RPL6 82 234 IPR041997 -
Amo03g2913 234 Gene3D - 89 173 IPR014722 -
Amo03g2913 234 Pfam Ribosomal protein L6, N-terminal domain 3 62 IPR005568 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g2913 Amo-Chr3 120737324 120738812 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g2913 1 234 Cytoplasmic Ribosomal Protein Gene Family AT1G74060 79.060 3.11e-117 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g2913 K02934 - gmx:100785356 346.665
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3831 13 128952608 128954485 Amo03g2913 03 120737324 120738812 hybridization