Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g2909 ATGGATTACTATTATGTGAACCCAATAAACCCCAATTACGGTGCTCATCATGATGATGACTACTCTGCCATGATGAGCATGTCTGATTTCATGATATCCGATTTTCTTATGGCTGATGATGATGCATATGGGTATGGTGTTGATGATCATCATCATAATAATCAAGAGAGTGGATCACAATCGCAAAGTACTAATGGATCGTCGGAGATGGCAACCTTCAGCGATGTCACTACTACCAATAATAATGGTGAAGCCTCTAGCATCAACAATAACATAAAATGCAAAAATGGGAGTAAGAGAAGTAAGAAAGAAGTGAATTCAAGAGTGGCGTTTAGAACGAAATCGGAGCTTGATGTTATGGATGATGGATACAGATGGAGGAAGTACGGAAAAAAGGCCGTCAAGAACACTCCAAATCTAAGGAACTATTACAAGTGTTCGAGTGAAGGATGCGGTGTGAAGAAGAGGGTGGAAAGGGACAGAGACGACTCAAGCTATGTTATAACAACCTATGAAGGGATACACAATCATGCAAGCCCTTTTACCTACTAA 552 0.4022 MDYYYVNPINPNYGAHHDDDYSAMMSMSDFMISDFLMADDDAYGYGVDDHHHNNQESGSQSQSTNGSSEMATFSDVTTTNNNGEASSINNNIKCKNGSKRSKKEVNSRVAFRTKSELDVMDDGYRWRKYGKKAVKNTPNLRNYYKCSSEGCGVKKRVERDRDDSSYVITTYEGIHNHASPFTY* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g2909 183 SMART WRKY_cls 120 179 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo03g2909 183 Gene3D WRKY domain 107 173 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo03g2909 183 PANTHER WRKY TRANSCRIPTION FACTOR 50-RELATED 16 180 - -
Amo03g2909 183 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 16 180 IPR044810 GO:0003700
Amo03g2909 183 ProSiteProfiles WRKY domain profile. 115 180 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo03g2909 183 SUPERFAMILY WRKY DNA-binding domain 112 180 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo03g2909 183 MobiDBLite consensus disorder prediction 56 95 - -
Amo03g2909 183 Pfam WRKY DNA -binding domain 121 177 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo03g2909 183 MobiDBLite consensus disorder prediction 47 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g2909 Amo-Chr3 120685678 120688448 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g2909 83 179 WRKY Transcription Factor Family AT5G64810 65.657 3.12e-41 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Amo03g2909 WRKY 1.2e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g2909 - - adu:107480370 320.472