Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g2887 ATGAGCCTAATATATTTTGCAGAGGGCGTTATAGCAGGAGGTACAGCCGGAGTCGTAGTTGAAACAGCTTTATACCCAATTGACACTATAAAAACACGTTTGCAGGCTGCTCGGGGAGGAGAAAAACTAATACTGAAGGGACTTTATTCTGGATTGGCAGGGAACCTTGCTGGTGTCTTACCGGCATCAGCTTTATTTGTTGGAGTTTATGAACCTCTGAAGCAGAAACTGTTGAGGATGTTTCCTGAAAACCTGAGTGCTTTTGCTCATCTGACTGCAGGTGCCATAGGGGGCATTGCTGCTTCACTGATTCGCGTTCCAACAGAGGTTGTTAAGCAACGAATGCAAACTGGACAGTTTACTTCAGCTGCTGGTGCTGTCCGCTTTATTGCTGCTAAGGAAGGTTTTAAAGGACTTTATGCTGGGTATGGATCTTTTTTATTGCGGGATTTGCCCTTTGATGCTATTCAGTTTTGCATCTATGAGCAGATTAGGATRRGTTATATGGCTGCGGCCCGAAGAAATTTGAATGATCCAGAAAATGCAATTATTGGTGCATTTGCAGGTGCACTAACTGGAGCTATAACAACTCCCCTTGATGTCATCAAGACAAGATTAATGGTTCAGGGATCTGCAAACCAATATAATGGAATCGTAGATTGTGTTCAAACAATTATCAAGGAAGAAGGACCTAGTGCACTTTTGAAGAAACAACTTCGCATCGCTGTAACTACAAGCTATGGGGGTGACCGCCATTTCCCAAAACGAAATCTTGTCCAATCATTTAACTTGCTTCCACTCACCCTTGCCTCCCTTTGTGGCAACACGGTGTGGGTCGCCATTTGTTTGGTGCTAGTTGCTACCCTGCTGGATGCAAAAATGGTGGGACAGAATAAGAAGCTCAACCTGAAAAATGTCAAGTTCATCAGGCAGAACGAGTTAGCCAGCTTCAAAATAATGGATGGGTCCACATGGTGCTTGCCCTTCAGTAGACCATGTGTTTGTATAACTGAACGCACTTCTTCGAACCCAAATGAGCAGAAGCTTCTGAGAGGCGCATTTGTGAAAGTGCCTGACCAAAGAGGGTATATCACAATGGACATGATGGAAGGAACATCTCAAATGCCCTTAGCAAAGGCAAGAACAATTGTTGTTCACAAAGCACTGCAACCATCTTGGAAAGAGAAGCTGGCCTTTCATTGGATTCACTTGCAACAATTATACCTCCCTTTATATGATCTAGTGCAAAATATATTAAGACTGTTTCGCAGTTGGCCTAAGGTTCTCCAATGTGCACTGGGCAGAGGAATTGATATGCATATTTACACTACCACTATTCAAACAGCTTTGAATTGGCAAAGCAGCATGCATCAGGGTTGCTAG 1383 0.4346 MSLIYFAEGVIAGGTAGVVVETALYPIDTIKTRLQAARGGEKLILKGLYSGLAGNLAGVLPASALFVGVYEPLKQKLLRMFPENLSAFAHLTAGAIGGIAASLIRVPTEVVKQRMQTGQFTSAAGAVRFIAAKEGFKGLYAGYGSFLLRDLPFDAIQFCIYEQIRXXYMAAARRNLNDPENAIIGAFAGALTGAITTPLDVIKTRLMVQGSANQYNGIVDCVQTIIKEEGPSALLKKQLRIAVTTSYGGDRHFPKRNLVQSFNLLPLTLASLCGNTVWVAICLVLVATLLDAKMVGQNKKLNLKNVKFIRQNELASFKIMDGSTWCLPFSRPCVCITERTSSNPNEQKLLRGAFVKVPDQRGYITMDMMEGTSQMPLAKARTIVVHKALQPSWKEKLAFHWIHLQQLYLPLYDLVQNILRLFRSWPKVLQCALGRGIDMHIYTTTIQTALNWQSSMHQGC* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g2887 460 ProSiteProfiles Solute carrier (Solcar) repeat profile. 85 167 IPR018108 -
Amo03g2887 460 Pfam Mitochondrial carrier protein 6 40 IPR018108 -
Amo03g2887 460 Pfam Mitochondrial carrier protein 85 169 IPR018108 -
Amo03g2887 460 Pfam Mitochondrial carrier protein 180 235 IPR018108 -
Amo03g2887 460 SUPERFAMILY Mitochondrial carrier 5 235 IPR023395 -
Amo03g2887 460 PANTHER S-ADENOSYLMETHIONINE CARRIER 1, CHLOROPLASTIC/MITOCHONDRIAL 6 237 - -
Amo03g2887 460 Gene3D Mitochondrial carrier domain 8 246 IPR023395 -
Amo03g2887 460 ProSiteProfiles Solute carrier (Solcar) repeat profile. 4 76 IPR018108 -
Amo03g2887 460 ProSiteProfiles Solute carrier (Solcar) repeat profile. 180 262 IPR018108 -
Amo03g2887 460 PRINTS Mitochondrial carrier protein signature 9 22 IPR002067 GO:0055085
Amo03g2887 460 PRINTS Mitochondrial carrier protein signature 22 36 IPR002067 GO:0055085
Amo03g2887 460 PRINTS Mitochondrial carrier protein signature 185 207 IPR002067 GO:0055085
Amo03g2887 460 PRINTS Mitochondrial carrier protein signature 140 158 IPR002067 GO:0055085
Amo03g2887 460 PANTHER S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN 6 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g2887 Amo-Chr3 120189763 120204834 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g2887 6 239 Chloroplast and Mitochondria Gene Families AT1G07030 32.432 2.35e-26 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g2887 K15111 - gmx:100811130 400.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3824 13 128635366 128640962 Amo03g2887 03 120189763 120204834 hybridization