Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g2881 ATGATGTCAACAACAACAACTTCACAAACTATGGTTAATAACCAAAGCTTATTTGGGGAGCAAGATCATCATGATAATGAGAATATGGCTACAGAAATGGGATTTCTTCCTCTTCTACCAACAAACATGATCTTCCCTACTTCTCCTTTGGGATGCAATCAACAACAACCCTGCTACTCGTTATTGAAACCCTTCTCTTCCATATTATCTCCAAATTCACTTGCATCTGATCAAGCTGATTCAACATCAAACCTAACCGCTGAAACCCTACTCGCAACTGATGCGCAACAAAAATCAGGATTGGACCTCACCTCTACAACTTTTCTTGGACCTCAGTTCCTATCTTTGAACAGATCCACTATAAGTAATCCATGGGCAACGGGAGAAGTACCTGATTGCTTCAGCAGTAAAAGAAATGTAGTAGATAATCATCATCATCATGTGGGGGTTCCTACCATTAAGATGAAGAAAATCAAGGGAAGAMGAAAGGTTAGAGAGCCTAGGTTTTGCTTCAAGACTATGAGCGATGTAGATGTCTTGGACGATGGCTACAAATGGAGGAAGTACGGTCAAAAAGTGGTCAAGAACACACAGCATCCCAGAAGCTACTACCGTTGCACACAAGACAATTGTCGCGTAAAGAAACGTGTGGAGCGCTTAGCTGAGGATCCAAGAATGGTGATAACAACATACGAAGGAAGACATGCACACACTCCATCCAATGATGTTGAAGACTCTCAACCTCCCTCTCAACTTACCAACTTCTTCTGGTAG 774 0.4186 MMSTTTTSQTMVNNQSLFGEQDHHDNENMATEMGFLPLLPTNMIFPTSPLGCNQQQPCYSLLKPFSSILSPNSLASDQADSTSNLTAETLLATDAQQKSGLDLTSTTFLGPQFLSLNRSTISNPWATGEVPDCFSSKRNVVDNHHHHVGVPTIKMKKIKGRRKVREPRFCFKTMSDVDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHAHTPSNDVEDSQPPSQLTNFFW* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g2881 257 Pfam WRKY DNA -binding domain 181 237 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo03g2881 257 SUPERFAMILY WRKY DNA-binding domain 172 238 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo03g2881 257 Gene3D WRKY domain 167 233 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo03g2881 257 SMART WRKY_cls 180 239 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo03g2881 257 ProSiteProfiles WRKY domain profile. 175 240 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo03g2881 257 PANTHER WRKY TRANSCRIPTION FACTOR 13-RELATED 71 247 - -
Amo03g2881 257 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 71 247 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g2881 Amo-Chr3 120125339 120127268 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g2881 70 257 WRKY Transcription Factor Family AT4G39410 49.580 7.83e-62 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Amo03g2881 WRKY 9.1e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g2881 - - adu:107480316 517.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3817 13 128566820 128569030 Amo03g2881 03 120125339 120127268 hybridization