Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g2878 ATGAACGGTCACCACCACCACTACTCACTCTTCTTCTTAACAACCACAATCACCTTCCTTTCCCTCCATTATCACCCCTCTGTTTCTTCTTCTTCGGAGGTGGAACAACTCATCAGGTTCAAAACCTCTCTCCCAAACCCATCACTCCTCCAAACATGGCTCCCCTCCAACAACCCATGCTCCTTCATCGGAATCACCTGCACCCATTCCCACGTGACTTCCATAGACCTCAGCTCCCTCCCACTCTCCACCAACCTCACACTCGTCTCCGCCACCCTCCTCACCCTCCACAGCCTCATCTCTCTCACCCTCTCCTCCACCAAACTCTCCGCCTCCCTCCTCTCTCCACTTCCAACCTGCACCGCTTCCTTAACCACACTCGACCTCTCCCATAACGGCCTCAACGTCCAACTCAACCAACTCTTCAACTTCTTCGCTCCATGTTCCAACTTGCACCACCTCAACCTCTCCAACAACAACATCGTATCCACCGAAACCGTTACCAAGTCGTTGCARAGTTCTTTGAATCTTTGGGTGTTGGACCTCTCTTACAACCAGCTTTCTGGTCCCGACGTTATGCCATGGATCGTCTCGTCCGGTTGCGATCCGATTCGTTACTTGGCTCTGAAAGGAAACAGGCTCACGGGAGAACTTGATTTTTCTGCTTGCCGGAACTTGCAGCGTTTGGACATTTCAGCAAACAACTTCTCTTCTATTGTTCCTTCATTTCGGGAGTGTTCTGCTTTGGAGTATCTCGATATATCGGCAAACAAGTTTTCCGGCGACGTTGCCGGTGCTCTCTCCGGTTGCGGGAACCTCACCTACTTAAACGTTTCTAGTAACCAGTTTTCCGGCGCGGTTCCGTTGCTTCCCGCAGGGAGCTTGCAGTTCCTCTATCTCTCTGGAAACAGTTTCTGGGGGGAGATCCCGGTGAAGGTCGCTGGGCTGTGTTCGAGCCTCGTGGAGCTTGATATCTCGTCGAACAACCTCACCGGCACAATTCCGATTGAACTTAGCGATTGTTCTTTGTTGAATTCACTTGTTCTATCCCGGAACAAGCTTTCCGGCGAGTTTCCGGTGGAGACCTTCGCCGGTATGAGTARCCTGAAGAAGCTCTCTGTTTCTTTCAACGAGTTTTCAGGTCCCTTGCCACAGTCACTGTCGAAATTGGCGAGTTTGGAGTCGCTGCATATGAGTTCTAACAACTTTTCAGGTTCAATTCCAAGAGGACTTTGYGATTATCCTGGGAATATTTTGAAGGAACTGTTCTTGCCAAATAACATGTTATCAGGTTCTATTCCATCCACAATCAGCAATTGTTCTCAGCTTGTTTCGTTGGATTTGAGTTTTAACTACTTTAAGGGCACCATCCCTTCAAGTTTAGGATCCCTCTCGGAACTCCGCGATTTGATCCTTTGGATGAACATGCTCACTGGGGAGATACCACAAGAGTTAACGAATGTTAAGCCTCTTGAGAATTTAATTCTYGATTTCAATGAGTTGAGTGGTGAGATTCCTTCTGGCCTAAGCAACTGTGGTAACTTGAGTTGGCTCTCTCTTTCAAATAACCGTCTSACAGGGGAGATTCCGGCCTCTATTGGCCGGCTCTCGAAGCTCGCTATACTTAAGCTGAGTAATAACTCGTTGTCTGGGAGGATTCCGCCGGAGCTTGGTGATTGTCACAGCTTGATATGGTTGGATTTGAATACTAATTCGCTGACCGGTTCGGTTCCTGCCGAGTTGTTCAAACAATCTGGCAAGATAGCCGTTAACTTCATCAGCGGGAAGACTTTTGTGTACATAAAGAACGATGGCAGTAAGATGTTCCACGGGGCAGGGAGTTTGCTGGAATTTGCAGGGATCAGGCAGGAGCAGCTGAACCGGATTTCGAGTAGGAACTCGTGGAATGTGACCAGGGTTTATCAAGGTAGCTTAGGTAAGCTCTTGCCACCAACTTTTAACAACAACGGTTCAATGATTTTCTTGGATGTTTCGCACAATATGCTGTCTGGTAGTATTCCTAAGGAGATTGGTAGCATGAACTACTTATACATTTTRTATATGGGTCACAACAATATATCCGGGAACATCCCACAAGATCTTGGAATGTTGAAGAATCTTGGCATTCTTGATCTCTCTAGTAACAGGCTTGAAGGACGGATTCCTGAAAGCTTGGCAGGCCTCTCGTTTCTSACGGAGATAGATTTGTCCAACAACTTTCTCTCCGGACTGGTTCCCTCGTCGGGACAATTCTATACTTTCCCGGCTAGCAGATTCCTCAACAATTCCGGACTCTGCGGTGTTCCTCTGGCTCCGTGTAAGGACGACTCTGCATCCGGCGCCAATGGACAGCGGCACAAGTCTCATAGAAGACAGGTTACACTTGTAGGGAATGTGGCCATGGGATTGCTATCCTCRCTCTTCTGCCTCTTTGTTTTGGTTATAATCGCCATCGAGACGCGAAARAGGAGGAAGAAGAAGGAGCCTGCGCTTGATTTCTACGTTGACAGTCGATCTCATTCGGGGACGGCCAATGCAGGGTGGAAGATGATTACCGCTCGCGAAGCACTCAGCATAAATCTTGAAACATTTGAGCAGCGGCCGCTTCGGAAGCTCACATTCGCGGATCTTYTAGAAGCTACCAACGGATTCCATGATGACAGCATCATCGGCTCGGGAGGTTTCGGCGTGGTGTATAAGGCCCAATTGAAGGATGGAAGTGTTGTGGCCATCAAGAAACTGATCCATATCAGTGGACAAGGGGACAGAGAATTCACTGCGGAAATGGAAACAATAGGGAGAATTAAACACAAGAATCTGGTTCCTCTACTCGGTTACTGCAAGGTTGGGGAGGAGAGGCTATTGGTTTATGAATACATGAAGTATGGGAGCCTGGATATTTTGCATGACCAGAAGAAAGCAGGGATCAAGCTGAATTGGGCGGCGAGGAAGAAGATTGCGGTCGGAGCAGCCAGAGGATTAGCTTTTCTTCACCATACTTGTAACCCAAACATCATTCATAGAGACATGAAATCAAGCAATGTGTTGCTTGATGAAAATTTGGAAGCCAGAGTTGCTGATTTTGGAATGGCTAGGCTAATGAGTAACGTGGATACACATTTGAGTGTCAGCACACTGGCCGGAACACCCGGCTATGTTCCACCGGAATACTATCACAGCTTTCGCTGTTCCACTCATGGCGATGTGTATAGCTTTGGCGTGGTTCTGTTGGAGCTTCTTACGGGGAAGAAGGCCACGGATTCAACTGATTTCGGCGATGACAACCTTGTGGGGTGGGTTAAACAGCATGCCAAACTCAAGAAAAGTGATGTGTTTGATCCTGAACTCAGGAAAGAGGATCCTTGCCCTGAACTTGAGCTTGTGCAGTACTTAAACGTTGCCTTTGCTTGCTTGGATTATCGGCCGCGGCGGCGTCCCAATATGATTCAAGTCTTGGTTATGTTTAAAGAAATCCAAGCAGGGTCAGGTATGGATTCACAGTCTACTATAGGTACTGAAGATGTGTGCTTTGATTCAGTTGAAATGGTAGATATGAGCATAAAAGAAGCTCCTGATTCCTGA 3582 0.4765 MNGHHHHYSLFFLTTTITFLSLHYHPSVSSSSEVEQLIRFKTSLPNPSLLQTWLPSNNPCSFIGITCTHSHVTSIDLSSLPLSTNLTLVSATLLTLHSLISLTLSSTKLSASLLSPLPTCTASLTTLDLSHNGLNVQLNQLFNFFAPCSNLHHLNLSNNNIVSTETVTKSLQSSLNLWVLDLSYNQLSGPDVMPWIVSSGCDPIRYLALKGNRLTGELDFSACRNLQRLDISANNFSSIVPSFRECSALEYLDISANKFSGDVAGALSGCGNLTYLNVSSNQFSGAVPLLPAGSLQFLYLSGNSFWGEIPVKVAGLCSSLVELDISSNNLTGTIPIELSDCSLLNSLVLSRNKLSGEFPVETFAGMSXLKKLSVSFNEFSGPLPQSLSKLASLESLHMSSNNFSGSIPRGLCDYPGNILKELFLPNNMLSGSIPSTISNCSQLVSLDLSFNYFKGTIPSSLGSLSELRDLILWMNMLTGEIPQELTNVKPLENLILDFNELSGEIPSGLSNCGNLSWLSLSNNRLTGEIPASIGRLSKLAILKLSNNSLSGRIPPELGDCHSLIWLDLNTNSLTGSVPAELFKQSGKIAVNFISGKTFVYIKNDGSKMFHGAGSLLEFAGIRQEQLNRISSRNSWNVTRVYQGSLGKLLPPTFNNNGSMIFLDVSHNMLSGSIPKEIGSMNYLYILYMGHNNISGNIPQDLGMLKNLGILDLSSNRLEGRIPESLAGLSFLTEIDLSNNFLSGLVPSSGQFYTFPASRFLNNSGLCGVPLAPCKDDSASGANGQRHKSHRRQVTLVGNVAMGLLSSLFCLFVLVIIAIETRKRRKKKEPALDFYVDSRSHSGTANAGWKMITAREALSINLETFEQRPLRKLTFADLLEATNGFHDDSIIGSGGFGVVYKAQLKDGSVVAIKKLIHISGQGDREFTAEMETIGRIKHKNLVPLLGYCKVGEERLLVYEYMKYGSLDILHDQKKAGIKLNWAARKKIAVGAARGLAFLHHTCNPNIIHRDMKSSNVLLDENLEARVADFGMARLMSNVDTHLSVSTLAGTPGYVPPEYYHSFRCSTHGDVYSFGVVLLELLTGKKATDSTDFGDDNLVGWVKQHAKLKKSDVFDPELRKEDPCPELELVQYLNVAFACLDYRPRRRPNMIQVLVMFKEIQAGSGMDSQSTIGTEDVCFDSVEMVDMSIKEAPDS* 1194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g2878 1193 Gene3D Ribonuclease Inhibitor 37 773 IPR032675 -
Amo03g2878 1193 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 16 1170 - -
Amo03g2878 1193 Gene3D Transferase(Phosphotransferase) domain 1 963 1160 - -
Amo03g2878 1193 SUPERFAMILY L domain-like 317 763 - -
Amo03g2878 1193 Pfam Leucine Rich repeat 123 134 IPR001611 GO:0005515
Amo03g2878 1193 Pfam Leucine Rich repeat 317 332 IPR001611 GO:0005515
Amo03g2878 1193 ProSitePatterns Protein kinases ATP-binding region signature. 890 913 IPR017441 GO:0005524
Amo03g2878 1193 PANTHER SYSTEMIN RECEPTOR SR160 16 1170 - -
Amo03g2878 1193 Pfam Leucine rich repeat 224 283 IPR001611 GO:0005515
Amo03g2878 1193 Pfam Leucine rich repeat 514 573 IPR001611 GO:0005515
Amo03g2878 1193 Pfam Leucine rich repeat 359 403 IPR001611 GO:0005515
Amo03g2878 1193 CDD STKc_IRAK 890 1158 - -
Amo03g2878 1193 ProSiteProfiles Leucine-rich repeat profile. 150 171 IPR001611 GO:0005515
Amo03g2878 1193 SMART serkin_6 884 1155 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo03g2878 1193 PRINTS Leucine-rich repeat signature 704 717 - -
Amo03g2878 1193 PRINTS Leucine-rich repeat signature 320 333 - -
Amo03g2878 1193 Pfam Leucine rich repeat N-terminal domain 31 67 IPR013210 -
Amo03g2878 1193 SUPERFAMILY L domain-like 44 415 - -
Amo03g2878 1193 Pfam Brassinosteroid receptor island domain 586 645 IPR045381 -
Amo03g2878 1193 SUPERFAMILY Protein kinase-like (PK-like) 862 1155 IPR011009 -
Amo03g2878 1193 SMART LRR_typ_2 728 751 IPR003591 -
Amo03g2878 1193 SMART LRR_typ_2 390 414 IPR003591 -
Amo03g2878 1193 SMART LRR_typ_2 223 245 IPR003591 -
Amo03g2878 1193 SMART LRR_typ_2 536 560 IPR003591 -
Amo03g2878 1193 SMART LRR_typ_2 704 727 IPR003591 -
Amo03g2878 1193 ProSiteProfiles Protein kinase domain profile. 884 1158 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo03g2878 1193 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1005 1017 IPR008271 GO:0004672|GO:0006468
Amo03g2878 1193 Pfam Protein kinase domain 884 1152 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo03g2878 1193 Gene3D - 591 655 - -
Amo03g2878 1193 Gene3D Phosphorylase Kinase; domain 1 845 959 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g2878 Amo-Chr3 120106976 120111205 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g2878 8 1192 Receptor kinase-like Gene Family AT4G39400 62.636 0.0 1399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Amo03g2878 Pkinase 8.5e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g2878 K13415 - gmx:100799772 1532.31