Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g2852 ATGGGTTGCGTTAATGGTAAGTTAGATTCTCCCATTCAAGAACGCCGCTTAAACAGATTGAAAAAGGAGTATGCTTATGCCAATCCCAAACTAACTTCATCTTCTTCTACGTCAACCATGAAACTAAAAAGCTACGATAACCATAGTTCTAACAGAAAAGAGAGCGTTAGTCATCCCAAAGATAATTACAGTAAGTTAAGGACTGGTGGCTATAGATATACAGATAAGGAAAAGGAAAAAACAGGGAAAAAGAAAACGGAAAAGGCTGTTGCTGCTAATGACATTGGTAAGTTGATGGAGGAAGAATCTAAGTTGTCCGAAGACAATATGAAAAAGAAAAATAAATTTGCAGGGTATGAAGTCGGTGAAGGTTGGCCCAAATGGTTGGCTGATAATATCCCTAAAGAGGTTTTGTCTGCTTTGGTTGCCAAGAGCGCTGACTCCTATGAAAAACTTGACAAAATTGGACGTGGAACATATAGCAATGTCTACAAAGCCCGTGATAAGGATACTGGAAAGATTGTTGCTCTGAAAAAAGTTCGTTTTGATACATCCGATTCTGAAAGTATAAAATTCATGGCGAGAGAGATTATGATACTGCAAAAGCTGGATCATCCCAATGTCATCAAGCTTAGAGGATTGGCAACATCTAGGATGCAATATAGTCTTTATCTCGTCTTTGATTATATGCAATGTGATCTTTCCAGAATTATCTCTCGTCCTGATGAGAGACTCACTGAGCCTCATATCAAGTGTTACATGCAACAATTGCTTGCTGGGCTCCAACATTGTCATGAGAGGGGAATTATTCACCGAGATATCAAATCTTCGAACTTGCTAATAGATAGAAGAGGTTCTTTAAAAATAGCAGATTTTGGTCTTGCAAATGTTGAACATCAAGGCCCTCTTACAAATCGAGTGGTGACACTTTGGTATAGGGCTCCTGAACTCCTCTTAGGTTCGACTGATTATGGATATAACATTGATCTATGGAGTGCTGGATGCTTGTTGGCTGAGATGTTTGTTGGAAGACCATTCATGCCCGGAAGGACAGAGGTTGAGCAGCTTCACCTGATTTTCAAACTATGCGGGTCTCCTCCAGAAGATTATTGGATAAAAATGAAGCTAAGATCAAGCTTCTTGCCCTCACAACATTACAAACCTAATTATGAGGACTACTTCCAAGGCTTTCCTTCCTCTTCATTGGATCTCTTGACCACACTTCTTCATCTTGACCCTGCATGTCGTGGCAGTGCTGCCTCTGCTCTTGAAACTGAATTCTTCAAAACTAGTCCATTAGCCTGTGACCCTTCAACCTTACCAGTGATCTACAAAGAAGAGGATGAACGCTCACATAAGAGACGCAAAAGACGCAAAGGTCACAATAACAAAGGGCAAATATCTTCTAAAACAAGGACAACTGGCACAAATGTATCAGAGAAGAACCAAACTGCTGAACAATCTTCAAAGGAACAGAAGATACAAGTTGAAGAAAAAGGAAGTAGCATAAACACATCATTACAGTTGATAGAGGAAAAAAGCATGAATACATCAACATCAATGTCCCCGATATTTCTTTCTACAGAAAGAAAATCACCAAAAACAGAGGGCCATCCTAATGCTCTTAAGAACATCAAGAATTACACTCTCTTACAGGCCTCTTTCGATATCATGAATAGAAATGAAGGCAACGAACTTGGTCCATTGCGTAGGTCCTTTTCTGCATTGGAATTTCGCCTTGACCATCTTGAGAAGCTTTCAAGTCTCTATGGACCAAACAAGAACTTAGGCCTTGGAATTTAA 1803 0.3971 MGCVNGKLDSPIQERRLNRLKKEYAYANPKLTSSSSTSTMKLKSYDNHSSNRKESVSHPKDNYSKLRTGGYRYTDKEKEKTGKKKTEKAVAANDIGKLMEEESKLSEDNMKKKNKFAGYEVGEGWPKWLADNIPKEVLSALVAKSADSYEKLDKIGRGTYSNVYKARDKDTGKIVALKKVRFDTSDSESIKFMAREIMILQKLDHPNVIKLRGLATSRMQYSLYLVFDYMQCDLSRIISRPDERLTEPHIKCYMQQLLAGLQHCHERGIIHRDIKSSNLLIDRRGSLKIADFGLANVEHQGPLTNRVVTLWYRAPELLLGSTDYGYNIDLWSAGCLLAEMFVGRPFMPGRTEVEQLHLIFKLCGSPPEDYWIKMKLRSSFLPSQHYKPNYEDYFQGFPSSSLDLLTTLLHLDPACRGSAASALETEFFKTSPLACDPSTLPVIYKEEDERSHKRRKRRKGHNNKGQISSKTRTTGTNVSEKNQTAEQSSKEQKIQVEEKGSSINTSLQLIEEKSMNTSTSMSPIFLSTERKSPKTEGHPNALKNIKNYTLLQASFDIMNRNEGNELGPLRRSFSALEFRLDHLEKLSSLYGPNKNLGLGI* 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g2852 600 Gene3D Phosphorylase Kinase; domain 1 137 231 - -
Amo03g2852 600 MobiDBLite consensus disorder prediction 513 529 - -
Amo03g2852 600 MobiDBLite consensus disorder prediction 27 88 - -
Amo03g2852 600 PANTHER CYCLIN-DEPENDENT KINASE 94 535 - -
Amo03g2852 600 Gene3D Transferase(Phosphotransferase) domain 1 232 469 - -
Amo03g2852 600 SUPERFAMILY Protein kinase-like (PK-like) 144 434 IPR011009 -
Amo03g2852 600 ProSiteProfiles Protein kinase domain profile. 149 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo03g2852 600 ProSitePatterns Serine/Threonine protein kinases active-site signature. 269 281 IPR008271 GO:0004672|GO:0006468
Amo03g2852 600 MobiDBLite consensus disorder prediction 70 88 - -
Amo03g2852 600 ProSitePatterns Protein kinases ATP-binding region signature. 155 178 IPR017441 GO:0005524
Amo03g2852 600 MobiDBLite consensus disorder prediction 466 490 - -
Amo03g2852 600 SMART serkin_6 149 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo03g2852 600 PANTHER CELL DIVISION PROTEIN KINASE 94 535 - -
Amo03g2852 600 Pfam Protein kinase domain 149 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo03g2852 600 MobiDBLite consensus disorder prediction 46 61 - -
Amo03g2852 600 MobiDBLite consensus disorder prediction 513 541 - -
Amo03g2852 600 MobiDBLite consensus disorder prediction 445 501 - -
Amo03g2852 600 MobiDBLite consensus disorder prediction 28 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g2852 Amo-Chr3 119579678 119582104 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g2852 143 459 Core Cell Cycle Gene Families AT5G10270 47.337 4.27e-100 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Amo03g2852 Pkinase 1.5e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g2852 K08819 - gmx:102667260 654.055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3803 13 128298274 128301045 Amo03g2852 03 119579678 119582104 hybridization