Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g2847 ATGGAAAAAGGAAAATTAATTCCGGGATTTCATTTCAATCCCACTGATGTAGAGCTTCTAAAGTATTTTTTGAAGAGAAAAGTGACAGGCAAAAAGCTACCCAATGTGATTGCTGAGATTAACGTTTATCAGTATTGTCCCTGGGATCTCCAAGGTAAGTCACATCTGAAAAGTGGGGATTTGGAGTGGTACTTCTTCTGTGCAAGAGGAAAAAATTATGGAATTGGGTCGAAGACGAACCGTGCTATAAAGAATGGGTACTGGAAAGCTACTGGTATGGACAAAGCTATTGTTCAGCATGACAAGCAAACAGTGGGGATGATGAAAACCCTTGTTTTCCACACTGGGAAACCGCCTCATGGGACCCGAACTGATTGGGTTATGCATGAGTATAGGCTTCAAGATAAAGACCTTACTGATAAAGGAATTGCTCAGGACTCTTATGTTATCTGTAAGGTGTTCCGAAAGGAGGGTCATGGCCCACGGAGCGGTGCACAATATAGGAAACCATTTAATGAAGAAGATTGGGATGATGATGATGACGATGATGATGATCATCACGTTGTTGAGGAGGGGGGAACCCCTTCAACTGCTTTGGTTGCGCCGGTTTCCATTCAGTCTATGACATTGGATGGCTCTTCTTACATGAAGGCAACCTCTGTTTCATGTGAGTCGGGACCTGTGGCTACTTCTCCTGTCCCATCAACTCCTTCTTCAGATGCAAGCATTCACACGGTTAATAATTCAACAGTGACTGATCTCTCCAAAGACGAAAAAACAGTACCTAAGGAAAATATTGCTGCCGGTGACCTCTTGAGTAAGTTTTTTGAGGGTTTGGAAGACCTCGAGTCTGAATACACTCCAAATGGAATGGGCTTGGATGACTTCGCCCCAAATGGAATAAACTATGATGACTTGGGGCACTTGGATTTGATTGATTGCAATTTCCTCTAG 954 0.4319 MEKGKLIPGFHFNPTDVELLKYFLKRKVTGKKLPNVIAEINVYQYCPWDLQGKSHLKSGDLEWYFFCARGKNYGIGSKTNRAIKNGYWKATGMDKAIVQHDKQTVGMMKTLVFHTGKPPHGTRTDWVMHEYRLQDKDLTDKGIAQDSYVICKVFRKEGHGPRSGAQYRKPFNEEDWDDDDDDDDDHHVVEEGGTPSTALVAPVSIQSMTLDGSSYMKATSVSCESGPVATSPVPSTPSSDASIHTVNNSTVTDLSKDEKTVPKENIAAGDLLSKFFEGLEDLESEYTPNGMGLDDFAPNGINYDDLGHLDLIDCNFL* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g2847 317 MobiDBLite consensus disorder prediction 159 195 - -
Amo03g2847 317 PANTHER PLANT NAC DOMAIN PROTEIN 1 229 - -
Amo03g2847 317 PANTHER PLANT NAC DOMAIN PROTEIN 240 301 - -
Amo03g2847 317 MobiDBLite consensus disorder prediction 159 173 - -
Amo03g2847 317 MobiDBLite consensus disorder prediction 223 244 - -
Amo03g2847 317 Pfam No apical meristem (NAM) protein 8 133 IPR003441 GO:0003677|GO:0006355
Amo03g2847 317 ProSiteProfiles NAC domain profile. 6 156 IPR003441 GO:0003677|GO:0006355
Amo03g2847 317 Gene3D NAC domain 15 159 IPR036093 GO:0003677|GO:0006355
Amo03g2847 317 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 240 301 - -
Amo03g2847 317 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 1 229 - -
Amo03g2847 317 SUPERFAMILY NAC domain 5 156 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g2847 Amo-Chr3 119392253 119394880 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g2847 1 273 NAC Transcription Factor Family AT5G64060 43.066 4.88e-72 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Amo03g2847 NAM 2.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g2847 - - adu:107480257 626.706
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3750 13 126640313 126642673 Amo03g2847 03 119392253 119394880 hybridization
Amo03g2847 03 119392253 119394880 Amo10g2083 10 74662546 74664564 PCT
Amo03g2847 03 119392253 119394880 Amo20g2573 20 120515985 120519140 PCT
Amo10g2083 10 74662546 74664564 Amo03g2847 03 119392253 119394880 PCT
Amo20g2573 20 120515985 120519140 Amo03g2847 03 119392253 119394880 PCT