Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g2822 ATGCCGGCGTGGTGGAGTAGAAAATCCTGCAAGAACAAACAGCAGAATCAGGGTGAGGTTGAAGATGAGGAAGAGACACGTGGCAGGCAGAAATTCAATCTGATAGGATCGCCGATTAGCATTATCAGCAGCAGGAAGAAAGGCAAGGACAAGAACAAGAACAACAAGAGCTTCGATGAGCTTATCGCCTCTCGCAACTCACCGAGGACAAGCAAGGAATTCGCCAGCGTCGACGGTAACGACAATAACAGAGACCGAGACAGAGGGCTTCCGTTGCCTCGCCCTACGGTTTCGGCCAATCACAGCTTCAACAACGATCAGGGCCTCGTCTTTGGATCTACTTCGCTATCTGGTTCCAGCGTCAGCTCCTCAACCTCTTACGATGACCACCCTATATCTCCTCAATTCATTAACAACAGAGGACAAGGTGACATCAAATTCCATGTGAGGCCAAAGAGCCCAGGTGCCGGGTCAAGGGGGCCGACAAGCCCTACATCGCCACTTCATCAGAGGATTTTGAGTCTCGACTCTCCTACAGGCAAGCAAGACGATGGAAAAAGTGAATGTCACCCCTTGCCTCTTCCCCCTGGCTCTCCTACTAGTCCTTCCACCCTTTCCACCCCACGGGCAAATGGATCCTTAGAAAACAACGCCAGTAATCTGTCCAAGTGGAAGAAAGGAAAGCTTCTAGGAAGGGGAACTTTTGGGCATGTTTATCTTGGATTTAATAGATTTGTATCATATACAAGTTTTGCTCCATCAAATATTCTAAGGCTGAAACTGAACCTGCGGTCTGTGTCATCTGTGATTGCAATTTATGTCGATATATTTAGTGAGAGTGGACAAATGTGTGCAATAAAGGAAGTCAGGGTTGTCTCTGATGATCCAACATCAAAAGAGTGCCTCAGACAACTTAATCAGGAGATAAACTTGCTTAATCAGCTTTCACATCCAAACATTGTTCAATACTATGGGAGTGAACTGGGTGAAGAAACACTATCAGTTTATTTGGAGTATGTTTCTGGTGGTTCTATCCATAAATTGCTACAGGAATATGGTTCATTTAAGGAGCCTGTCATTCAAAATTATACCAGGAAGATTGTATCTGGGCTTGCTTATTTGCATGCAAGAAATACAGTACACAGAGATATCAAAGGAGCTAACATACTTGTTGATCCTAATGGTGAAATCAAGCTGGCAGACTTTGGAATGGCTAAACTTATAAATTCTGCTGCCTCAGTACTTTCATTCAAAGGAAGTCCATACTGGATGGCACCTGAGGTTGTAATGAATACCAATGGCTATGGTCTTCCAGTTGATATATGGAGCTTGGGGTGCACAATTCTTGAAATGGCAACGTCGAAGCCTCCATGGAATCAATATGAAGGGGTAGCTGCCATATTTAAAATTGGTAACAGCAAAGATATGCCTGAAATCCCTGAACATCTTTCAGATGATGCCAAAAGCTTCATTAAGCTATGTTTAAATAGGGACCCGTTAGCACGCCCAACAGCTCAAATGCTACTAGACCACCCCTTCATTCGTGACCAATCAGCAACAAAAGCTGTAAATGTTAGCATAACCAGAGATGCTTTCCCCCGCATGTTAGATGGAAGCCGGACTCCGCCGCCTGTTTTGGAGCATCAATCCAATAGAACAAGTATAACGTCACTTGATGGAGATCATGCAACAAAGACAGCTCGAGCAGCTTCTCACGCATTAAGGAGCCCAAGAGACAACGCAAGAACAATCACATCTTTGCCAGTGTCTCCCTCTTCAAGTCCATTGAGACAATATGGGACAGCACAAAAGAGCGGTTTCTTTTCTCCTCCTCATCCAACTTACACAATGATGGGGCAAAATAATTTCAATTTGAGTGACACGTCGCCATATTCTGTRAGATCAAATGCAGCATTCACTCTCGATCCTTGGCATGAAACGTCTCGATACAAAGCCCAAACACCACTTGGTGGATCTCCAAGAATGAGATTCATTTGA 1998 0.4454 MPAWWSRKSCKNKQQNQGEVEDEEETRGRQKFNLIGSPISIISSRKKGKDKNKNNKSFDELIASRNSPRTSKEFASVDGNDNNRDRDRGLPLPRPTVSANHSFNNDQGLVFGSTSLSGSSVSSSTSYDDHPISPQFINNRGQGDIKFHVRPKSPGAGSRGPTSPTSPLHQRILSLDSPTGKQDDGKSECHPLPLPPGSPTSPSTLSTPRANGSLENNASNLSKWKKGKLLGRGTFGHVYLGFNRFVSYTSFAPSNILRLKLNLRSVSSVIAIYVDIFSESGQMCAIKEVRVVSDDPTSKECLRQLNQEINLLNQLSHPNIVQYYGSELGEETLSVYLEYVSGGSIHKLLQEYGSFKEPVIQNYTRKIVSGLAYLHARNTVHRDIKGANILVDPNGEIKLADFGMAKLINSAASVLSFKGSPYWMAPEVVMNTNGYGLPVDIWSLGCTILEMATSKPPWNQYEGVAAIFKIGNSKDMPEIPEHLSDDAKSFIKLCLNRDPLARPTAQMLLDHPFIRDQSATKAVNVSITRDAFPRMLDGSRTPPPVLEHQSNRTSITSLDGDHATKTARAASHALRSPRDNARTITSLPVSPSSSPLRQYGTAQKSGFFSPPHPTYTMMGQNNFNLSDTSPYSVRSNAAFTLDPWHETSRYKAQTPLGGSPRMRFI* 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g2822 665 MobiDBLite consensus disorder prediction 544 561 - -
Amo03g2822 665 MobiDBLite consensus disorder prediction 59 77 - -
Amo03g2822 665 PANTHER MAP KINASE KINASE KINASE 1 244 - -
Amo03g2822 665 MobiDBLite consensus disorder prediction 14 30 - -
Amo03g2822 665 MobiDBLite consensus disorder prediction 1 218 - -
Amo03g2822 665 Pfam Protein kinase domain 278 514 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo03g2822 665 MobiDBLite consensus disorder prediction 534 602 - -
Amo03g2822 665 ProSiteProfiles Protein kinase domain profile. 224 514 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo03g2822 665 CDD STKc_MEKK1_plant 223 514 - -
Amo03g2822 665 SMART serkin_6 224 514 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo03g2822 665 PANTHER MAP KINASE KINASE KINASE 271 646 - -
Amo03g2822 665 MobiDBLite consensus disorder prediction 158 177 - -
Amo03g2822 665 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 244 - -
Amo03g2822 665 SUPERFAMILY Protein kinase-like (PK-like) 221 596 IPR011009 -
Amo03g2822 665 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 271 646 - -
Amo03g2822 665 MobiDBLite consensus disorder prediction 203 218 - -
Amo03g2822 665 Gene3D Transferase(Phosphotransferase) domain 1 268 536 - -
Amo03g2822 665 MobiDBLite consensus disorder prediction 44 58 - -
Amo03g2822 665 MobiDBLite consensus disorder prediction 578 602 - -
Amo03g2822 665 MobiDBLite consensus disorder prediction 97 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g2822 Amo-Chr3 118891158 118896090 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g2822 1 578 MAP Kinase Kinase Kinase AT1G53570 54.454 0.0 542
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Amo03g2822 Pkinase 3e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g2822 K04421 - gmx:100787064 817.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo03g2822 03 118891158 118896090 Amo10g2092 10 74876034 74882153 PCT
Amo10g2092 10 74876034 74882153 Amo03g2822 03 118891158 118896090 PCT