Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g2803 ATGTATGAAAGCCATAGCAATTTGCCAAATGGGTTCACCACAGAAAGCCCTGAAAGCCCTTGCTTAAAGAACAACAATAACCACAACAACAACAACAATAGTAGCAGCAATAACAACAACAAAGAACAAGATCGCTTTCTCCCCATAGCCAATGTTGGTAGAATCATGAAAAAAGTGATCCCAGCCAACGGGAAAATTTCCAAGGACGCCAAAGAGACCGTTCAAGAATGCGTATCGGAGTTCATTAGCTTTGTCACTGGAGAAGCCTCCGACAAATGCCAAAGAGAAAAAAGAAAGACCATCAATGGTGATGATATCATTTGGGCCATCACAACCCTAGGGTTTGAGGATTATGTGGAACCATTAAAATCCTATCTCCAAAAATATAGAGACATAGAAGGAGAAAAGCTTAATGTTCCAAAGCAACAACGTTCTGAACAAAGGCTACACCATCAGCATCAGCATCAGCATCAACAACACCATCATCATAACCAAGATGAAACTAATCAAACACTAAATAGTGTATATACTTCTGCAAATCTCATTTCTCATCAACCTCCTTATGTAGCCACGGATCAACCATTTTCATTGCCGTTTTCACCAAATTCAATTCAGAAACAGTTACGACCTCAAGATCAGATTGATTCCGTGGGGCATTGGTACGAGTAA 669 0.4006 MYESHSNLPNGFTTESPESPCLKNNNNHNNNNNSSSNNNNKEQDRFLPIANVGRIMKKVIPANGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVEPLKSYLQKYRDIEGEKLNVPKQQRSEQRLHHQHQHQHQQHHHHNQDETNQTLNSVYTSANLISHQPPYVATDQPFSLPFSPNSIQKQLRPQDQIDSVGHWYE* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g2803 222 MobiDBLite consensus disorder prediction 140 168 - -
Amo03g2803 222 MobiDBLite consensus disorder prediction 201 222 - -
Amo03g2803 222 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-7 2 211 - -
Amo03g2803 222 SUPERFAMILY Histone-fold 43 163 IPR009072 GO:0046982
Amo03g2803 222 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 46 110 IPR003958 -
Amo03g2803 222 ProSitePatterns NF-YB/HAP3 subunit signature. 77 93 IPR003956 GO:0005634|GO:0006355|GO:0043565
Amo03g2803 222 MobiDBLite consensus disorder prediction 1 43 - -
Amo03g2803 222 PRINTS CCAAT-binding transcription factor subunit A signature 93 111 - -
Amo03g2803 222 PRINTS CCAAT-binding transcription factor subunit A signature 74 92 - -
Amo03g2803 222 PRINTS CCAAT-binding transcription factor subunit A signature 112 130 - -
Amo03g2803 222 Gene3D Histone, subunit A 32 174 IPR009072 GO:0046982
Amo03g2803 222 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 2 211 IPR027113 GO:0001228|GO:0006355|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g2803 Amo-Chr3 118478442 118479794 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g2803 12 220 CCAAT-HAP3 Transcription Factor Family AT2G13570 61.187 2.67e-73 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Amo03g2803 CBFD_NFYB_HMF 3.3e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g2803 K08065 - gmx:100778216 322.013