Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g2785 ATGGGTGAAAGGTGTGACTTTRTTGAAGAAATCTCCACAAAAAGAGCAGARTGGATCATTAAGGTTTATGTTGTAAGGATGTGGTATGGTCCTCCACGCCCAAATAGTAGTGAAGCTGGTGCTTTAGAGATTGCATTGCACGACTTGAAGGGCAGCAGGATACACTGCACGATTCCAAAATCAGTGGTGRGACTGTTCCGGCCCATTCTGTCGGAGGGGCAGCTATATAGTATTTCTTCTTTTATATATAGGATCACCTTATTACAAAGAAGCATGGTTGTTCATATCCCTCAACCGCTCTTTCCGTTTCAGCCATTTACATTTAGGAGTATTGCGTCTATCCTGCAAGAAGAAAGGCTTGATCAGAATTTTCTTTTTGATGTGCTAGCAGAGGTTATAGGGAAGGAGGACCCAAAGGATTTGGTTACCAAGCAAGGGCAGGAAAGCAAGCGGTTAGGGCTGTTAGTGGAGGACCTTGAGAAGAATTCTATCAGTTGTACCCTATTTGGTTCACTGGTAGATTTGATCCAACCCTATTTAGATGGTGATAAGACTGAACCTCTCATAGTTGCATTCCAACTATTTAGAGCAAAGGAATGGAATGGGAAGATTAGTATTCAGAGTAGTTTTGACACATCTAACATCCACATAAATCCCAATATTAAAGAGGCCGAACTATTTAAAAAGAGTTTGGTGGACAGCACTCAAGGTGATAGTTGTTTTTCATCCCAGAGGATAAGTCATATGTCATCCAGTTCATATCGATCTGCTATTGATGAGCTCAGAAAAGGGATCTGCAAAGTTGAAACAATAGACAGTGTGTTGAATGCAAGTGATGTTGGGTTTAAATGGATACTATGTACGATTGTTGACTTTGATGTCGGGAGGAATGATTGGTTCTTCATAGCTTGCAAGTATTGTCATAAAAAATGCAAAAAGATAGAGGAGAGATTTGAATGTGACCATTGCCGCAAGAAGGCCGTTCAGGTAGACTTGCGGTATAAGCTTCAAGCTTATGTTTCCGATGCAACTGGAAGTATGTGTGTAGTGTTGTGGGATACCGAAGCAAGCCAAATTGTAGGGTTGAGTGCAACCAAAGTCAGAGAAACCTACAGTCAGGATGATTCTGATGATTCTTACCCGGAGGTGTTGAAGACGGCCTTGGACATGAAGTTGCTATTAAGGATTAATGTGAAAAGTAGTAATTTGAGTGGTAATGAAAATGTCTATAATGTCACAAAAGCTTGCCTTGATGAGCACCTTATCCATAAATACAGCCAGTCTGTAAATGAACAATCTACGAAGGGGTTGGATAATGTTACTAGCTTGGATTGTACTACTGATGTTGTTTATCTTGGTGATGATGTATCTGTCCAAGGTGGACAAGAATCTGTCAATGAGTCTAAGACGGTTACCAGCAGCAAGGGAAGAGCTAAAAGGATTGATGCAGGAATTATAGGAGTAGTTGCGAAAGACTTGGAAAGTATACCCGTAGGGCAGTTGTCAAGTACTAAGAAGCCAAGGTTGAGTATTAAGAAAGAAAAGACTCTCTAG 1554 0.4073 MGERCDFXEEISTKRAEWIIKVYVVRMWYGPPRPNSSEAGALEIALHDLKGSRIHCTIPKSVVXLFRPILSEGQLYSISSFIYRITLLQRSMVVHIPQPLFPFQPFTFRSIASILQEERLDQNFLFDVLAEVIGKEDPKDLVTKQGQESKRLGLLVEDLEKNSISCTLFGSLVDLIQPYLDGDKTEPLIVAFQLFRAKEWNGKISIQSSFDTSNIHINPNIKEAELFKKSLVDSTQGDSCFSSQRISHMSSSSYRSAIDELRKGICKVETIDSVLNASDVGFKWILCTIVDFDVGRNDWFFIACKYCHKKCKKIEERFECDHCRKKAVQVDLRYKLQAYVSDATGSMCVVLWDTEASQIVGLSATKVRETYSQDDSDDSYPEVLKTALDMKLLLRINVKSSNLSGNENVYNVTKACLDEHLIHKYSQSVNEQSTKGLDNVTSLDCTTDVVYLGDDVSVQGGQESVNESKTVTSSKGRAKRIDAGIIGVVAKDLESIPVGQLSSTKKPRLSIKKEKTL* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g2785 517 CDD RPA1_DBD_B_like 142 231 - -
Amo03g2785 517 Gene3D - 8 93 IPR012340 -
Amo03g2785 517 SUPERFAMILY Nucleic acid-binding proteins 106 230 IPR012340 -
Amo03g2785 517 SUPERFAMILY Nucleic acid-binding proteins 10 85 IPR012340 -
Amo03g2785 517 Gene3D - 248 426 IPR012340 -
Amo03g2785 517 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT A 45 413 - -
Amo03g2785 517 Gene3D - 101 239 IPR012340 -
Amo03g2785 517 CDD RPA1_DBD_A_like 20 86 - -
Amo03g2785 517 SUPERFAMILY Nucleic acid-binding proteins 281 415 IPR012340 -
Amo03g2785 517 PANTHER REPLICATION FACTOR A 1, RFA1 45 413 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Amo03g2785 517 Pfam Replication factor-A C terminal domain 296 408 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g2785 Amo-Chr3 118065379 118068014 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g2785 11 409 Core DNA Replication Machinery Family AT4G19130 22.402 3.63e-16 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g2785 - - ahf:112716567 988.408