Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g2772 ATGGTGAGAGACGATTTATACATAACGGTTCCGAGCTTCTTCCGGTGCCCTATATCACTGGACGTCATGAAGTCCCCCGTCAGCCTCTGCACCGGCGTTACCTACGACCGCTCCAGCATCCAGCGCTGGCTCGACAACGGCAACAACACCTGCCCCGCCACCATGCAGGTCCTACATACCAAGGAATTCGTTCCCAACCGCACCCTGCAGAGGCTCATCCAGATCTGGTCCGAATCCCTCCGCAACTCTCCTGACTCACCCGACCCTGCCGACTCTCTCCTTTCCAAAGAYCAGGTCCTAGCCGCCTTCGCCCACTTGCAGTCCCGCCCCCTCGACCGCCTCGAATCGCTCGCCAAAATCCTCAGTTTCGCGCGAGATTCTGAGGAAAACCGCAAGTATCTTGCGAGAATAGAAGCGTTCCTGCCTGCGCTGGTCGGTTTCCTCCTCAATGTTGACGACGATTTTCAGTTCCTTGAGCAGGTTGTTATGGCGTTGAATCTGATTCTGGATAAAATCCAAGACCGCGAGGCCTTGAAAACCTTGATGCTCAAGAACCAGAGCAGCAATAGCAGCAGCTGCTTGGATTCTCTGCTCCTCGTTCTGCAACGAGGAAGCACCGATTCGAAGATCTCGTCGGCTAGGGTTTTGCAATCACTCGCCATGGATACGGAATCGAAGCTCTTGATAGGGGAAAAGAAAGGCCTAATTTCCCAAGTGCTCAGGCTAACCGCGCCGGACAAAGATCCAGCGGTGATCGAGAACGCCTTGTCGTGCCTKGTGGCAATCTCCACGGCAAAAMGRAATAAGTTKATGCTGGTGCATCTTGGAGCAGTGAAAGCGTTCTCGAAGCTTCTAACGGAATCGAGCGTGAGCGCCTCGGTKGCGGAGAAGGTGCTGAAGCTTCTGGAAACGGTGTCGTCAACGAAGGAAGGGAGAACGGAGATATGCGAGGACAGCACGTGCGTGGCGGCGATACTGAGCAAGGTTCTGAAGGTTTCGAGCGCGGCGACGGAACACGCCGTGACGACTCTGTGGAGCGTGTGCTATCTGTTTCGTGACCAGAAGGCGCAAGAAGCGGTTACGAAGGCTAACGGCTTAACGAAGATTCTGTTACTGATGCAGAGCAATTGTTCGCCTCCTGTGCGCCAAATGTCCGCAGATTTGCTTAAGATTTTTAGAGTAAATTCCAAATCGTGTCTTTCTTGTTATGACACCAAAACTACCCATATCATGCCCTTTTGA 1242 0.5306 MVRDDLYITVPSFFRCPISLDVMKSPVSLCTGVTYDRSSIQRWLDNGNNTCPATMQVLHTKEFVPNRTLQRLIQIWSESLRNSPDSPDPADSLLSKDQVLAAFAHLQSRPLDRLESLAKILSFARDSEENRKYLARIEAFLPALVGFLLNVDDDFQFLEQVVMALNLILDKIQDREALKTLMLKNQSSNSSSCLDSLLLVLQRGSTDSKISSARVLQSLAMDTESKLLIGEKKGLISQVLRLTAPDKDPAVIENALSCLVAISTAKRNKXMLVHLGAVKAFSKLLTESSVSASVAEKVLKLLETVSSTKEGRTEICEDSTCVAAILSKVLKVSSAATEHAVTTLWSVCYLFRDQKAQEAVTKANGLTKILLLMQSNCSPPVRQMSADLLKIFRVNSKSCLSCYDTKTTHIMPF* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g2772 413 PANTHER WDSAM1 PROTEIN 4 413 IPR045185 GO:0061630
Amo03g2772 413 SUPERFAMILY RING/U-box 5 79 - -
Amo03g2772 413 Gene3D - 87 408 IPR011989 -
Amo03g2772 413 CDD RING-Ubox_PUB 14 56 IPR045210 -
Amo03g2772 413 Pfam U-box domain 10 79 IPR003613 GO:0004842|GO:0016567
Amo03g2772 413 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 86 IPR013083 -
Amo03g2772 413 SUPERFAMILY ARM repeat 191 399 IPR016024 -
Amo03g2772 413 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Amo03g2772 413 SMART arm_5 353 394 IPR000225 GO:0005515
Amo03g2772 413 SMART arm_5 127 170 IPR000225 GO:0005515
Amo03g2772 413 SMART arm_5 264 307 IPR000225 GO:0005515
Amo03g2772 413 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Amo03g2772 413 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 27-RELATED 4 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g2772 Amo-Chr3 117545081 117546579 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g2772 1 413 U-box Gene Family AT5G09800 52.857 5.48e-143 412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g2772 - - gmx:100799627 580.096
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3721 13 125793919 125795175 Amo03g2772 03 117545081 117546579 hybridization