Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g2746 GTTTTTGTGGAAGAAGGAGAAGAAACAGAGCATGATTCTGAGAGCTATGGTTGTTCCGGGAATCAGAAGAAGCGGAAGGTTAACGAATTATGCTCTCGCGATGCTGAAGATTTCAGCAGTGGTTCTGGCTCTTGGTGCAGCGAAGGAGCTTATTGGAATGGTGGTGCTGAGGTTCAGTCCAATTCAAATTCCGTACAGCTGAACGGTAAAATGGCACCGCGTGACGGCGGCGGAGATGGGACTCGGCCGCCATTGTTGCGGTCTACACGGGGCCGCCATCAGTCCTTGCCGTCGAGGTTCAATGACTCGGTTCTTGATTCATGGAAGAACCAAGGAGTCAAAAAGAAAAAGAAGGGTGATAATTATTGTGCTCTTGAAGTGAATATAGAGATGGAAAAGAATGGTTTTGTTAAAACTGAGAGTGGTGTGGAGCAGAAGGTTAAAACTACTGGGAATGGTGGTGAAAGGAGGAAACAGGTTTACAGGCCGGAGGATTTCGCGTTGGGTGATATAGTTTTGGCGAAGTGTGGGAAAAGGTACCCTGCTTGGCCTGCTGTGGTGATTGATCCTATCTTGCAGGCTCCGAAATCCGTCCTCAGCTGCTGCGTTCTTGGTGCACTCTGCGTCATGTTCTTTGGCTTTTCGAAAAATGGGACCCAAAGGGACTATGCTTGGGTGAAGCAGGGAATGATATTCCCCTTCTCTAAGTTCATGGAAAGATTCCAGGGTCAGACACAGTTGTACAAGAGCAAACCGAGTGACTTTCGCATGGCATTGGAGGAGGCAATGCTGGCTGTAGATGGTCTTCTCAACTCACAGCTGGAAGTAGAGGAAGTAACTTATGTAAATGCTTATCCGAATGGACATTTAGAGGCCCCAGCCATGCCTGTTGATTATGAATACCACTGCGAGGATCAAGATACGATATCTTGTGCTGGCTGTTATTTGATGTTGCCATGCAAAACGATGAAGAAGATTAAGGACCCAAGTGGTGCATCTCAATTTTATTGCAAACATTGCTTTAAGTTACGAAAATCAAAACAATATTGTGGCATTTGCAAAAAGATTTGGCACCATTCACATGGTGGGAATTGGGTGTGCTGTGATCGCTGTAATGTTTGGGTGCATGCTGAGTGCGATAAAATATCCATTGAACTTTTCAAGGATCTTGAAAACACAGATTACTATTGCCCAGAGTGCAAGGGAAATTTCAATAAGAAATTACCCATACCCAAAACAAGCAAGTCAAAAAAGAAGTATAATGTGGAAGACAGATTGGTAGATAGTAGCCAAAAATCTATAGTACCTGAGACGGTAACAGTGGTGTGCAATGGCATGGAAGGACTCTACTTCCCAAAGCTTCATTTAATTATGTGCAAGTGTAGCTCTTGTGGTTCAAGGAAGCAGACACCAAGTGAATGGGAAAGGCACACAGGTAGCAGAGCTAAAAAATGGAAACATAGTGTGAAAGTGAAAAGCATGATGCTCCCACTAGAAAAATGGATCACAGAAAACATTTCACAAGATGGAGTTCCACAGCAGTTAGATCAGCAGCAGGTGCTTAGCTTTTTGCAAGAAAATTATGAGCCAGTTCATGCAAAATGGACAACAGAAAGATGTGCAGTTTGCAGATGGGTAGAAGATTGGGAAGATAATAAAATTATTATTTGTAACAGGTGCCAAATAGCAGTCCACCAAGAATGCTATGGGGCAAAGAATGTTCAAGATTTTACTTCTTGGGTTTGTAGAGTATGTGAAACACCAGATGTGGAGAGAGACTGTTGCCTCTGTCCTGTAAAAGGTGGTGCTCTAAAACCAACTGATGTTGAGATGCTATGGGTTCATGTGACATGTGCTTGGTTTCAACCTCAAGTGGTTTTCCAAAATCATGAGGCCATGGAACCTGCGGTAGGAATACTGAGAATTCCTCCTAATACCTTTGTTAAGTTGCATTCTGTGGAGAAGAATGGGACTCAAATAACAAAGAAGCTAATATACTGTGCAGGTCCCAAATCCAGAATCTGTATTGGTTGTACATACTCCCCTGGGGTTTTCTCTCCCAGAGCCTCTCTTGAAAATCATAGAAGATGCTTCCGGGGGTCAAGGCTGGTTTCATCAAAGAATGTAGAGCTTATTCAATCTTCAAACTCTGAAGGTGACAAGATTGAGCCATTTTCTGCTGCAAGATGTCATGTATACTGTAGATCACTGAATAAGAAGGCTGAAATACCAATAATTCACTTGCTGAAGGGACCCGGCCATCATTCTTTAAGTGCAATAACTCAGTTGAACAGCTATAAGGATTCTGAAGATTCTAAAGTATTTACTTCTTTCAAGGAACGACTTCATCATTTACAGAAAATGGAAAAGCTTCGAGTTTGCTTTGGAAAATCGGGTATCCATGGATGGGGTCTTTTTGCTCGTAGAGATATACAAGAAGGAGAGATGGTTGTTGAGTATCGCATTGAGCGGGTAAGGCGAAGTGTTGCTGATTTAAGGGAAGTGAAATACCGTGCAGAAGGAAAAGATTGCTATCTGTTCAAGATCAGTGAGGATGTGGTAATTGATGCAACGTACAAGGGCAATATAGCACGGCTAATAAACCATTCTTGCATGCCAAATTGTTATGCAAGGATTATGAGTTTGGGTGATCAAGAGAGTCGGATCGTTCTCATTGCCAAGACGAATGTTTCTGCTGGCGAAGAATTAACGTATGATTACTTATTCGATCCAGATGAGCAGGATGAACTGAAAGTTCCCTGCCTTTGCAAAGCCTCCAATTGTAGGAAATTTATGAACTAG 2802 0.4283 VFVEEGEETEHDSESYGCSGNQKKRKVNELCSRDAEDFSSGSGSWCSEGAYWNGGAEVQSNSNSVQLNGKMAPRDGGGDGTRPPLLRSTRGRHQSLPSRFNDSVLDSWKNQGVKKKKKGDNYCALEVNIEMEKNGFVKTESGVEQKVKTTGNGGERRKQVYRPEDFALGDIVLAKCGKRYPAWPAVVIDPILQAPKSVLSCCVLGALCVMFFGFSKNGTQRDYAWVKQGMIFPFSKFMERFQGQTQLYKSKPSDFRMALEEAMLAVDGLLNSQLEVEEVTYVNAYPNGHLEAPAMPVDYEYHCEDQDTISCAGCYLMLPCKTMKKIKDPSGASQFYCKHCFKLRKSKQYCGICKKIWHHSHGGNWVCCDRCNVWVHAECDKISIELFKDLENTDYYCPECKGNFNKKLPIPKTSKSKKKYNVEDRLVDSSQKSIVPETVTVVCNGMEGLYFPKLHLIMCKCSSCGSRKQTPSEWERHTGSRAKKWKHSVKVKSMMLPLEKWITENISQDGVPQQLDQQQVLSFLQENYEPVHAKWTTERCAVCRWVEDWEDNKIIICNRCQIAVHQECYGAKNVQDFTSWVCRVCETPDVERDCCLCPVKGGALKPTDVEMLWVHVTCAWFQPQVVFQNHEAMEPAVGILRIPPNTFVKLHSVEKNGTQITKKLIYCAGPKSRICIGCTYSPGVFSPRASLENHRRCFRGSRLVSSKNVELIQSSNSEGDKIEPFSAARCHVYCRSLNKKAEIPIIHLLKGPGHHSLSAITQLNSYKDSEDSKVFTSFKERLHHLQKMEKLRVCFGKSGIHGWGLFARRDIQEGEMVVEYRIERVRRSVADLREVKYRAEGKDCYLFKISEDVVIDATYKGNIARLINHSCMPNCYARIMSLGDQESRIVLIAKTNVSAGEELTYDYLFDPDEQDELKVPCLCKASNCRKFMN* 934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g2746 933 SUPERFAMILY Tudor/PWWP/MBT 160 273 - -
Amo03g2746 933 CDD PHD_TCF19_like 350 400 - -
Amo03g2746 933 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 528 590 IPR013083 -
Amo03g2746 933 SMART PWWP_4 166 235 IPR000313 -
Amo03g2746 933 SUPERFAMILY FYVE/PHD zinc finger 347 408 IPR011011 -
Amo03g2746 933 CDD SET_SETD1-like 780 929 - -
Amo03g2746 933 ProSitePatterns Zinc finger PHD-type signature. 540 585 IPR019786 -
Amo03g2746 933 Pfam PHD-finger 349 401 IPR019787 -
Amo03g2746 933 PANTHER PHD FINGER PROTEINS 649 933 - -
Amo03g2746 933 PANTHER PHD FINGER PROTEINS 13 649 - -
Amo03g2746 933 MobiDBLite consensus disorder prediction 66 99 - -
Amo03g2746 933 ProSiteProfiles Zinc finger PHD-type profile. 347 403 IPR019787 -
Amo03g2746 933 SUPERFAMILY SET domain 778 933 IPR046341 -
Amo03g2746 933 ProSiteProfiles Post-SET domain profile. 917 933 IPR003616 -
Amo03g2746 933 SMART PHD_3 539 586 IPR001965 -
Amo03g2746 933 SMART PHD_3 349 401 IPR001965 -
Amo03g2746 933 ProSiteProfiles Zinc finger PHD-type profile. 537 588 IPR019787 -
Amo03g2746 933 Pfam PHD-zinc-finger like domain 593 648 - -
Amo03g2746 933 SMART set_7 791 914 IPR001214 GO:0005515
Amo03g2746 933 ProSiteProfiles PWWP domain profile. 180 237 IPR000313 -
Amo03g2746 933 Gene3D - 431 516 IPR010919 -
Amo03g2746 933 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 342 407 IPR013083 -
Amo03g2746 933 ProSiteProfiles Extended PHD (ePHD) domain profile. 591 732 IPR034732 -
Amo03g2746 933 ProSiteProfiles SET domain profile. 791 908 IPR001214 GO:0005515
Amo03g2746 933 Gene3D - 156 275 - -
Amo03g2746 933 CDD PHD_ATX3_4_5_like 539 585 IPR042011 -
Amo03g2746 933 Pfam PHD-finger 552 586 - -
Amo03g2746 933 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 649 933 - -
Amo03g2746 933 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 13 649 - -
Amo03g2746 933 MobiDBLite consensus disorder prediction 1 24 - -
Amo03g2746 933 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 22 933 IPR025780 -
Amo03g2746 933 Pfam SET domain 802 907 IPR001214 GO:0005515
Amo03g2746 933 SUPERFAMILY FYVE/PHD zinc finger 537 602 IPR011011 -
Amo03g2746 933 Gene3D SET domain 709 933 IPR046341 -
Amo03g2746 933 SUPERFAMILY SAND domain-like 437 497 IPR010919 -
Amo03g2746 933 Pfam PWWP domain 169 265 IPR000313 -
Amo03g2746 933 SMART PostSET_3 917 933 IPR003616 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g2746 Amo-Chr3 117321044 117327458 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g2746 306 374 EF-hand Containing Proteins AT5G28340 50.725 1.16e-15 78.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Amo03g2746 SET 2.4e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g2746 - - gmx:100793624 1364.75