Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g2745 ATGGAGCATCACTCAGACAAGGTTCAAGCAGTTGCTTGGAATCATCATGAACCAAAAATTCTTCTTAGTGGTTCATTTGATCATACTGTGATCCTGAGGGATGGAAGGATGCCATCCCATCCTGGTTATAAGTGGTCAGTCACAGCTGATGTCGAGAGCTTGGCCTGGGATCCACACACTAACCACGATTTTGTGGCGAGTCTCGAGGATGGTACTGTCAAGTGTTTTGATGTTCGGACCGCAATGTCTGAATCCACATCTGATCTAAGTTCTACATTTACTCTTCATGCACATGACAAAGCTGTTACCTCAGTATCCTATAATGTGTCAGCACCTAATCTACTTGCTACTGGATCGATGGACAAAACGGTAAAGCTTTGGGATTTATCGAACAACCAACCATCTGTTGTGGCATCTAAAAACTCCAATGCTGGAGCTGTATTTTCTATTTCGTTTTCAGAGGACAACCCCTTTGTGTTGGCTATAGGAGGCTCAGAGGGAAAATTGCAAGTTTGGGACACTTTATCTGAGTCTGCTGTCTCTCGGCGTTATGAAAATTACAACAAGAATAGAACTCGGTCGTGA 585 0.4359 MEHHSDKVQAVAWNHHEPKILLSGSFDHTVILRDGRMPSHPGYKWSVTADVESLAWDPHTNHDFVASLEDGTVKCFDVRTAMSESTSDLSSTFTLHAHDKAVTSVSYNVSAPNLLATGSMDKTVKLWDLSNNQPSVVASKNSNAGAVFSISFSEDNPFVLAIGGSEGKLQVWDTLSESAVSRRYENYNKNRTRS* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g2745 194 Pfam WD domain, G-beta repeat 92 128 IPR001680 GO:0005515
Amo03g2745 194 Pfam WD domain, G-beta repeat 146 173 IPR001680 GO:0005515
Amo03g2745 194 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 95 133 - -
Amo03g2745 194 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 1 186 - -
Amo03g2745 194 Gene3D - 1 89 IPR015943 GO:0005515
Amo03g2745 194 Gene3D - 90 194 IPR015943 GO:0005515
Amo03g2745 194 ProSiteProfiles Trp-Asp (WD) repeats profile. 140 182 IPR001680 GO:0005515
Amo03g2745 194 PANTHER PERIODIC TRYPTOPHAN PROTEIN 1 1 186 IPR044285 GO:0006364
Amo03g2745 194 SUPERFAMILY WD40 repeat-like 3 175 IPR036322 GO:0005515
Amo03g2745 194 ProSiteProfiles Trp-Asp (WD) repeats profile. 95 137 IPR001680 GO:0005515
Amo03g2745 194 SMART WD40_4 88 128 IPR001680 GO:0005515
Amo03g2745 194 SMART WD40_4 38 77 IPR001680 GO:0005515
Amo03g2745 194 SMART WD40_4 133 173 IPR001680 GO:0005515
Amo03g2745 194 SMART WD40_4 1 34 IPR001680 GO:0005515
Amo03g2745 194 PRINTS G protein beta WD-40 repeat signature 160 174 IPR020472 -
Amo03g2745 194 PRINTS G protein beta WD-40 repeat signature 115 129 IPR020472 -
Amo03g2745 194 PRINTS G protein beta WD-40 repeat signature 21 35 IPR020472 -
Amo03g2745 194 ProSitePatterns Trp-Asp (WD) repeats signature. 115 129 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g2745 Amo-Chr3 117318269 117319943 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g2745 1 173 U-box Gene Family AT2G33340 31.868 4.87e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g2745 K14791 - gmx:100807947 343.969