Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g2735 ATGGCTTCAGTCTCTAACGCTGGTGCGGAAGCAACAACTTTCTTCACAGAGCGAAACGGCTTTGGATCTAGCTCCGAGGAAATTGGTGAGGCAGTTGGATTTCACAGCACACCTGAAACTGCCGCCGACTCCGCCGCCGCAGTCGCTGGCACAGGCGATTCCGCGAACGCCATCACGATCACCGTTGCAATTGCAATTGACTCTGCATCCGCTAGGGCAACAGCAACAACAGCAGCAACAACCGCAGCCGTGGTTGTTTTCGCAGGGACAGCAGCTGAGAGCGCCGCCGCAGTCGCCAGCAGTGCGGCAGCAAAAGCTTTCGCCGGTTCCTCGAATTCCGTACACTGTGCAGAAGCTTCCGGTAAAGGCGTTCAAAGTGTCGAGTCTCCCAGTCCCAGGTCACAACCTTGGCATAATGTTGAATTGAAAGACAGCACTCCAAAGAAATCAAAACAATGTAACTGCAAAAATTCTCGATGCCTCAAATTGTACTGTGAATGCTTTGCGTCTGGGATGTATTGTGATGGTTGCAATTGTACAAATTGTCAAAACAATGTGGATAATGAGGCAGCCAGACAGGAGGCTGTTGGACTAACATTAGAGCGCAATCCAAATGCTTTCAGACCAAAAATTGCTAGCAGTCCACAAGAAACTCGAGATTCCAAGGAAGATGTATCTGAAATTCAATTAGTTGGAAAGCACAATAAAGGATGTCACTGTAAAAAATCAGGTTGCCTTAAGAAGTATTGTGAGTGCTTCCAAGCCAATATCCTCTGCTCTGAAAATTGCAAATGCATGGACTGCAAGAATTTTGAAGGAAGTAATGAAAGAAGAGCAAGTTTTCATGAAGAGTGTAATATGTTTCACATCAAACAGGAAGCAAATGCTGCCATCAGTGGAGCAGTTGGTTCCTCTGGCTACGGGACTGGAATTGCCATAACACCCAAGAAAAGAAAAATTCAGGAAATATTTTCTAGCAAATCGTCGATAGATAAAACTGTTTGCCAAACATCTCAATATCAACAGGAAACTGATCCTATAGTTACACCATCGACATCTCAGTCAACTGCCTTTTATGTTGACACTGCCAACACTAGAAATTCAGGTTATTCAAGATCTACATACAGGTCACCATTGGCGGATGTCCTCCAGCCACAAAATGTGAAGAATCTCTGTTCACTTTTTGTTGTTCTCTCAGGAGTAGCTGCCAAAACGAATGCAGAAATGAGAGCCAAAGTAGGCCTGAACGTTGATGCTGGGAAATTTAAATCTTCTATTCCTTCATCAACTCAGTTGCTGCAAGACAGGGAAGATGTCCGCAAGTTTGTATGTGATGATCATAAAGATGAAGTAGATAGAGTTGATATTGACTGTTATAATAGGCCACTTTCACCAGAAACCCTATCACTGATGTGTGATGAACAAGATGAGGTGTTTTTCAATAATGGTTCTGCAAATAGAGTGGCATGCAACAATTTTCAAAGTATTGTTCAAAAGTCATCTACTTCTGATCGATGCCCTGATGTGTATGAGGAGCAAGAAAGGGTTGTACTCACAAAGTTCTGGGATGTTCTACGTGGACTCATTACTGTTGGAAGCATAAAAGAAACAATGTGCTCTTCATTAGCCAAGAAAGARGGGGGAAGCGAGGAAGAACRTGCAGCCAACAGTAATGGTGCTGAAGTTGATATAGGGAGTGAAAAGAAGGAAACTCCCAGCAACTGTGTTGCAAGGTGCCCCATCTCATCATCGGCCATTGAAATATCTCAGAAAAAGCATGCAATGATCAATGGCAATGATGATCTTGATCTCTCCTTAAGGTTTGCTTGCCAATTTTATGGAAGGGAATGA 1851 0.4365 MASVSNAGAEATTFFTERNGFGSSSEEIGEAVGFHSTPETAADSAAAVAGTGDSANAITITVAIAIDSASARATATTAATTAAVVVFAGTAAESAAAVASSAAAKAFAGSSNSVHCAEASGKGVQSVESPSPRSQPWHNVELKDSTPKKSKQCNCKNSRCLKLYCECFASGMYCDGCNCTNCQNNVDNEAARQEAVGLTLERNPNAFRPKIASSPQETRDSKEDVSEIQLVGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSNERRASFHEECNMFHIKQEANAAISGAVGSSGYGTGIAITPKKRKIQEIFSSKSSIDKTVCQTSQYQQETDPIVTPSTSQSTAFYVDTANTRNSGYSRSTYRSPLADVLQPQNVKNLCSLFVVLSGVAAKTNAEMRAKVGLNVDAGKFKSSIPSSTQLLQDREDVRKFVCDDHKDEVDRVDIDCYNRPLSPETLSLMCDEQDEVFFNNGSANRVACNNFQSIVQKSSTSDRCPDVYEEQERVVLTKFWDVLRGLITVGSIKETMCSSLAKKEGGSEEEXAANSNGAEVDIGSEKKETPSNCVARCPISSSAIEISQKKHAMINGNDDLDLSLRFACQFYGRE* 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g2735 616 MobiDBLite consensus disorder prediction 121 141 - -
Amo03g2735 616 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 236 270 IPR005172 -
Amo03g2735 616 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 151 185 IPR005172 -
Amo03g2735 616 ProSiteProfiles CRC domain profile. 149 273 IPR005172 -
Amo03g2735 616 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 5 ISOFORM X1 120 584 - -
Amo03g2735 616 MobiDBLite consensus disorder prediction 121 143 - -
Amo03g2735 616 PANTHER TESMIN/TSO1-RELATED 120 584 IPR028307 -
Amo03g2735 616 SMART CXC_2 233 274 IPR033467 -
Amo03g2735 616 SMART CXC_2 148 188 IPR033467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g2735 Amo-Chr3 117049591 117054294 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g2735 128 544 CPP Transcription Factor Family AT4G29000 51.487 9.41e-130 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Amo03g2735 TCR 3.3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g2735 - K21776 gmx:100811459 636.721