Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g2716 ATGCCTCTTCTGAGGAGAAAGCCTTTTTCCTTGGCTGATCCACCTAAGGACTTGAAGCCAGACGAGCATGTTTATCAAATTCGATTTACAAAGGAAATATTTCGAGATTATAACGATTATTTGAACCGTATAAATCTATATCGCCAGAGGATTTGGATGTGTAAAGTAACTGGAAAAACCAACTTGACTTATGAAGAGGCTTTGGTGTCAGAAAAAAGTGCCTCTGAGAAAGTTCAACAGTTTCCAAAAGAATTAAGGGCTTCTGTGTTAAGGATTATTCAGTACAGTATGCTCCCTTTGAAGGATCTTGCTGATTTCATTGCTGAAAAATTGGAAGGACGTTTTTTTGTGGGTGCTGAACTGCATGGGAAGAAGGACAATGAGTTATACCCCTGCAGAATATTAAAAGTCATCCCGAAAGGAGTTGACAAATTTTATTATGAGGTAGCTTGGCTTGACAAAGACAAGAATATAGGTGAAAAAGCAGAAGTCAATGCAAAAGATTTGGTACTAAAGAAACCATTATTCAGCAGAAATATGTTGAAGTCTTTTATCCGGGAATCGACATATAGGAATGCTCCTTGGGTTTTACATGAAGAAGTGGCAAAAAATCATGGAATCTCCACTGACATACCCGAGGAGTTAAGAGGAAGAGTTTGCTTCAAGAATGGACTTCTAACCTGCTCCAAGAAAAGAAAAACTGAGGAATCACTGGCTGAAACTGAAAACTGTAAAAGGAAGAAGTTGGATGGGGCAGAATTTGATGGTTCTACTGAAGAGCAGCAAGAAAATGGTCAGCACAAGGTTGAGCGAATCAAATATCCAATTGATGATTTGTTAGTGAAGCCTAGTCCACATGATCCTGTTTTGGCTAATCGCCCTTCTCCATCAAGAGACTTCAATGTCCCCATGAACTGTGTAGGAAATCTCTTAATGGTTTGGGATTTTTGTACCACTTTTGGGAAAGTGTTGCACTTGTTGCCCTACTCTCTAGAAGATTTTGAAAATGCAATCTGCCACAAGGACAGCAATATTGTTCTCCTTGTGGAGTCACATGCAGCTCTTTTTCGGGTTCTTATACAAGATGATAGTGAATACACTGAAGCAGTGAAAAACCGAAGGACGAAGTCCAAGATTACAATGGTTAACTGGACAGAATATCTATGTCATTTTCTAGAAATGATCAATGTTCCTGAATTGCGGCAATGTGAAGCAACCATAAAACGGGGACATTATGGCCTTGTAGATATCAATGCTAAATTAGAAATCCTATGTGAATTGGTCAATCGAGTGATTGAAACGACAATTTTTAGAGAGAAGTTGGGTGAGATTATTGAACAGCGGCATGTGCTTGGGGTGTCTAGGAGGGAAGAAGTGCTGGAAGATGCTAGGAAGAGAAAAAAAGAAAAAGAGACGTTGAAAGCTGAGATAGAGAGCAATGAAGTTGTGAATGGACATCACCTGAACAGTGAAAACGTCTCATCAAACAGTGATGATGATATACAGAATGGACACATTGGAAAGAAAAGAAATGGAGAGAGAGAATCATCTAGCGAAGACAATACAATTGGAAGTTTGATCAAACACTCGAATCCTGCTCCAAAGAACATGCCTAAGTCTAAGAAGCCAAATTCAGAGCCGAAACAACCAACAGAAAATGGAAAAGAATTACCAAAGCAATTTAAGAGTGATAAGGATTCACCAGAGAAGAATAGTAAAGAACAGAGGAAAGAATATTTTGAACGGGAGATGGAGAAGCGGCCTATTCGTAGAAGCCCATTAGGTAAGGACAGAAATTATAATAGGTATTGGTGGTTTCGCCGTGATGGAAGGATATTTGTTGAAAACTCTGACTCGAAGGAGTGGGGATACTACAGCAGTAAGGAAGAGCTTGATGCATTTATGGGTTCACTGAACTGCAAGGGTGAGCGCGAAAGGGCACTGCGAAATCAACTGGAAAAATATTATAGTAGAGTATGTTCTGAACTCCAGAAAAGATCGAAGGATTTGATGCACAGGATTGCAGCGGACGAGTCTGTCCTTCGAAGGTCCACTCGAGTTCGAGCCCCTCCCAGGCAAAACCCTGCAAATGCTTTCCTCAATTATGTTAACAAGTGGAAAGTAGATTAG 2130 0.4 MPLLRRKPFSLADPPKDLKPDEHVYQIRFTKEIFRDYNDYLNRINLYRQRIWMCKVTGKTNLTYEEALVSEKSASEKVQQFPKELRASVLRIIQYSMLPLKDLADFIAEKLEGRFFVGAELHGKKDNELYPCRILKVIPKGVDKFYYEVAWLDKDKNIGEKAEVNAKDLVLKKPLFSRNMLKSFIRESTYRNAPWVLHEEVAKNHGISTDIPEELRGRVCFKNGLLTCSKKRKTEESLAETENCKRKKLDGAEFDGSTEEQQENGQHKVERIKYPIDDLLVKPSPHDPVLANRPSPSRDFNVPMNCVGNLLMVWDFCTTFGKVLHLLPYSLEDFENAICHKDSNIVLLVESHAALFRVLIQDDSEYTEAVKNRRTKSKITMVNWTEYLCHFLEMINVPELRQCEATIKRGHYGLVDINAKLEILCELVNRVIETTIFREKLGEIIEQRHVLGVSRREEVLEDARKRKKEKETLKAEIESNEVVNGHHLNSENVSSNSDDDIQNGHIGKKRNGERESSSEDNTIGSLIKHSNPAPKNMPKSKKPNSEPKQPTENGKELPKQFKSDKDSPEKNSKEQRKEYFEREMEKRPIRRSPLGKDRNYNRYWWFRRDGRIFVENSDSKEWGYYSSKEELDAFMGSLNCKGERERALRNQLEKYYSRVCSELQKRSKDLMHRIAADESVLRRSTRVRAPPRQNPANAFLNYVNKWKVD* 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g2716 709 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 589 655 IPR028941 -
Amo03g2716 709 MobiDBLite consensus disorder prediction 541 586 - -
Amo03g2716 709 ProSiteProfiles DDT domain profile. 304 365 IPR018501 -
Amo03g2716 709 ProSiteProfiles WAC domain profile. 22 127 IPR013136 -
Amo03g2716 709 SMART testlast3 304 365 IPR018501 -
Amo03g2716 709 Coils Coil 456 480 - -
Amo03g2716 709 MobiDBLite consensus disorder prediction 466 586 - -
Amo03g2716 709 Pfam DDT domain 305 362 IPR018501 -
Amo03g2716 709 MobiDBLite consensus disorder prediction 466 481 - -
Amo03g2716 709 MobiDBLite consensus disorder prediction 483 501 - -
Amo03g2716 709 MobiDBLite consensus disorder prediction 502 517 - -
Amo03g2716 709 Pfam ATP-utilising chromatin assembly and remodelling N-terminal 24 120 IPR013136 -
Amo03g2716 709 PANTHER BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN, 2A 1 707 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g2716 Amo-Chr3 115837142 115843061 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g2716 570 654 Homeobox Transcription Factor Family AT1G28420 38.298 1.62e-07 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Amo03g2716 WAC_Acf1_DNA_bd 2.2e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g2716 - - gmx:100789956 1003.05