Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g2697 ATGTCGAAAGCGGGAAGCACAGCGGCACCGTTGAAGCCAGCGTGGGTTCTCCCACACCGAACCCCGAGGCTGACGGAACTGTACGCGCTTGGAAGAAAACTGGGTCAAGGTCAATTCGGAACAACCTTCCACTGCACTGAAAAGTCCACGGGTCGCATCTTCGCCTGCAAGTCCATCCCAAAGCGCAAGCTCTTCTGCAAAGAAGACTACGACGACGTTTGGAGAGAGATTCAGATAATGCACCATCTTTCAGAACACCCCAACGTGGTTCGAATCCATGGCACCTTCGAGGACAGCCTTGCCGTTCATCTCGTTATGGAGCTCTGTGAAGGCGGCGAGCTCTTCGATAGGATCGTTCACAAGGGTCACTACAGTGAGAGACAAGCAGCAAAGCTTATCAAGACCATTGTTGAGGTTGTTGAATCTTGCCACTCTCTTGGGGTCATGCATAGGGACCTCAAGCCTGAGAATTTCTTGTTCGATAGCGTTGACGAAGATGCTAAGCTTAAAGCCACAGATTTTGGATTGTCTGTCTTCTATAAGCCTGGTGAATCGTTTTGTGATGTTGTTGGGAGCCCATACTATGTTGCACCAGAGGTCTTGCGCAAGCATTATGGACCAGAATCAGATGTGTGGAGTGCAGGGGTTATTTTGTACATCTTATTGAGTGGGGTGCCACCATTTTGGGCTGAAACTGAACCTGGGATCTTCCGACAGATTTTACTAGGAAGAATTGATTTTCAGTCTGAGCCCTGGCCTAGCATTTCGGACAGCGCCAAGGATCTAATTCGGAAAATGCTTGATCAAAATCCAAAAACCAGGCTCACAGCACATGAAGTACTTCGCCACCCATGGATTGTTGATGACAACATTGCACCAGATAAACCTCTTGACTCTGCAGTTTTGTCTAGACTGAAGCAATTCTCTGCAATGAATAAGCTGAAAAAGATGGCTTTGCGTGTTATTGCCGAGCGGCTTTCTGAGGAAGAAATCGGTGGCCTTAAAGAGTTATTCAAGATGATTGACACAGACAGCAGCGGAACCATAACATTTGATGAGTTAAAGGAAGGCTTAAAGCGAGTAGGATCCGAACTTATGGAGTCTGAAATCAAGGATCTGATGGATGCAGCGGATATTGATAAAAGTGGGACAATTGATTATGGCGAATTCATTGCTGCAACTGTTCATTTAAATAAGCTGGAGAGAGAGGAAAACCTTTTGTCAGCGTTCTCGTATTTTGACAAAGATGGTAGTGGCTACATAACCATTGATGAGATTCAACAAGCTTGTAGGGACTTCGGTTTAGATGACATACATATTGATGACATGATCAAAGAAATAGATCAAGACAATGATGGACAAATAGATTATGGGGAATTTGCTGCGATGATGAGAAAGGGGAATGGAGGGATAGGAAGGAGAACCATGAGAAAAACACTCAATTTTAGAGATGCTTTTGGATTAGTAAGCAATGGAGCCAATCAAGATATTGATGGTCACCTTTAG 1506 0.4509 MSKAGSTAAPLKPAWVLPHRTPRLTELYALGRKLGQGQFGTTFHCTEKSTGRIFACKSIPKRKLFCKEDYDDVWREIQIMHHLSEHPNVVRIHGTFEDSLAVHLVMELCEGGELFDRIVHKGHYSERQAAKLIKTIVEVVESCHSLGVMHRDLKPENFLFDSVDEDAKLKATDFGLSVFYKPGESFCDVVGSPYYVAPEVLRKHYGPESDVWSAGVILYILLSGVPPFWAETEPGIFRQILLGRIDFQSEPWPSISDSAKDLIRKMLDQNPKTRLTAHEVLRHPWIVDDNIAPDKPLDSAVLSRLKQFSAMNKLKKMALRVIAERLSEEEIGGLKELFKMIDTDSSGTITFDELKEGLKRVGSELMESEIKDLMDAADIDKSGTIDYGEFIAATVHLNKLEREENLLSAFSYFDKDGSGYITIDEIQQACRDFGLDDIHIDDMIKEIDQDNDGQIDYGEFAAMMRKGNGGIGRRTMRKTLNFRDAFGLVSNGANQDIDGHL* 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g2697 501 Pfam EF-hand domain pair 334 394 IPR002048 GO:0005509
Amo03g2697 501 Pfam EF-hand domain pair 404 465 IPR002048 GO:0005509
Amo03g2697 501 Gene3D - 399 500 - -
Amo03g2697 501 ProSitePatterns EF-hand calcium-binding domain. 342 354 IPR018247 -
Amo03g2697 501 CDD STKc_CAMK 28 285 - -
Amo03g2697 501 SUPERFAMILY Protein kinase-like (PK-like) 25 298 IPR011009 -
Amo03g2697 501 ProSitePatterns Protein kinases ATP-binding region signature. 34 57 IPR017441 GO:0005524
Amo03g2697 501 ProSitePatterns EF-hand calcium-binding domain. 448 460 IPR018247 -
Amo03g2697 501 ProSitePatterns Serine/Threonine protein kinases active-site signature. 148 160 IPR008271 GO:0004672|GO:0006468
Amo03g2697 501 Gene3D Transferase(Phosphotransferase) domain 1 115 326 - -
Amo03g2697 501 SMART serkin_6 28 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo03g2697 501 ProSitePatterns EF-hand calcium-binding domain. 378 390 IPR018247 -
Amo03g2697 501 ProSiteProfiles EF-hand calcium-binding domain profile. 439 470 IPR002048 GO:0005509
Amo03g2697 501 PANTHER BNAA09G05220D PROTEIN 13 478 - -
Amo03g2697 501 SMART efh_1 333 361 IPR002048 GO:0005509
Amo03g2697 501 SMART efh_1 439 467 IPR002048 GO:0005509
Amo03g2697 501 SMART efh_1 369 397 IPR002048 GO:0005509
Amo03g2697 501 SMART efh_1 405 433 IPR002048 GO:0005509
Amo03g2697 501 Gene3D Phosphorylase Kinase; domain 1 30 114 - -
Amo03g2697 501 ProSiteProfiles EF-hand calcium-binding domain profile. 329 364 IPR002048 GO:0005509
Amo03g2697 501 CDD EFh 334 393 IPR002048 GO:0005509
Amo03g2697 501 ProSiteProfiles Protein kinase domain profile. 28 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo03g2697 501 ProSitePatterns EF-hand calcium-binding domain. 414 426 IPR018247 -
Amo03g2697 501 Pfam Protein kinase domain 28 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo03g2697 501 Gene3D - 327 398 - -
Amo03g2697 501 ProSiteProfiles EF-hand calcium-binding domain profile. 365 400 IPR002048 GO:0005509
Amo03g2697 501 SUPERFAMILY EF-hand 325 466 IPR011992 -
Amo03g2697 501 ProSiteProfiles EF-hand calcium-binding domain profile. 401 436 IPR002048 GO:0005509
Amo03g2697 501 PANTHER SERINE/THREONINE-PROTEIN KINASE 13 478 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g2697 Amo-Chr3 115544923 115549543 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g2697 10 488 EF-hand Containing Proteins AT1G35670 78.882 0.0 788
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Amo03g2697 Pkinase 1.8e-77 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g2697 K13412 - gmx:100806678 919.072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3632 13 123406046 123410084 Amo03g2697 03 115544923 115549543 hybridization
Amo03g2697 03 115544923 115549543 Amo08g2328 08 36618617 36621669 PCT