Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g2677 AGAGCCACTCTCGAGGCTCCCCTCCAGCCCTCCATTCTCACCTCTCGCTTTCACCACGTCCAGTCTCCACCGCGAGCTTCCGTCACAACCTCCATTCAGCCACCGCCACCGTCGCAAGGTCCTTGGAAGTCACTCACCGTCGCAAGTTTCTTTCAGCCAGCTTTTCGTTCGCGCAGCCAGCTTTCCTTTCAGCCGTCAAAATCGCAGCCACTGCCAGCACCAGTTGCTGTCATGCAGTCTTCTTGCCGGCGCCAGCTCTGTTCGACCCTTCCACCCCAGCCATTGTCCTTGTCGCCGCTAGCTCTGCACTCTTCCCTCTCTTCCACTAACCCTAGGGTTGCATGCAATTATCCACACGAGAACATAACATTCAAGATAGATGAGAGTAGCAGCAACCCTAATTACTTGGCATTTGTGATTTGGTATCAACAGGGAATTAGAGACATAACTACTGTCCAGCTTTATGAGACTGAGAATTTTGAGTGCAAGCTGCTAGATTGGAGCCATGGTGCAGTGTGGAGTAGCACCTGCGGCAGTGATGGCATTGATTAG 552 0.5272 RATLEAPLQPSILTSRFHHVQSPPRASVTTSIQPPPPSQGPWKSLTVASFFQPAFRSRSQLSFQPSKSQPLPAPVAVMQSSCRRQLCSTLPPQPLSLSPLALHSSLSSTNPRVACNYPHENITFKIDESSSNPNYLAFVIWYQQGIRDITTVQLYETENFECKLLDWSHGAVWSSTCGSDGID* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g2677 183 MobiDBLite consensus disorder prediction 18 41 - -
Amo03g2677 183 PANTHER EXPANSIN-B3 110 179 - -
Amo03g2677 183 SUPERFAMILY PHL pollen allergen 121 177 IPR036749 -
Amo03g2677 183 PANTHER EXPANSIN-LIKE B1 110 179 - -
Amo03g2677 183 Pfam Expansin C-terminal domain 122 176 IPR007117 -
Amo03g2677 183 Gene3D - 114 181 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g2677 Amo-Chr3 115275090 115276573 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g2677 112 173 Expansin Gene Family AT4G38400 35.484 5.13e-09 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g2677 - - ccaj:109799868 109.768