Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g2663 ATGGACAACAATCAACAATCTCAACCACCATCTATAATGCAAGATCAAGCAATGCCAAGAAGACACTACAGAGGGGTTAGGCACCGGCCATGGGGGAAATGGGCCGCGGAGATTCGAGATCCGAAGAAGGCAGCAAGGGTTTGGCTTGGAACTTTCGAAACTGCCGAGGAAGCTGCACTTGCTTATGACGAAGCCGCTCTTAGATTCAAAGGAAGCAAAGCTAAGCTCAACTTTCCAGAAAGGGTTCATCTCACTCGTGAATTCGGTTACCTCACTAACCGTCCTCCAGAACCGGAAATTGGCAATAACAATGGTCAACAAGTACCTAGTACTACTACCACAATTTCTCATGCTTCAGCTTCACAATTTTCTGGCAGTAGTGAGAGTAACAACAACAATTTCAATTATGCTTTTCCTCATTTGTATGGGAATCATAAAAATATGTTTGTTTCTTCCTCTTTGTCTTCGTCTTCGTCTTCATCTTCTGGATTTTCTATGCAATTTGGAGGTTCTTCTTCTAAGTCTCCTCCTATGAATTAA 540 0.4278 MDNNQQSQPPSIMQDQAMPRRHYRGVRHRPWGKWAAEIRDPKKAARVWLGTFETAEEAALAYDEAALRFKGSKAKLNFPERVHLTREFGYLTNRPPEPEIGNNNGQQVPSTTTTISHASASQFSGSSESNNNNFNYAFPHLYGNHKNMFVSSSLSSSSSSSSGFSMQFGGSSSKSPPMN* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g2663 179 MobiDBLite consensus disorder prediction 97 111 - -
Amo03g2663 179 MobiDBLite consensus disorder prediction 1 25 - -
Amo03g2663 179 SMART rav1_2 22 85 IPR001471 GO:0003700|GO:0006355
Amo03g2663 179 CDD AP2 22 80 IPR001471 GO:0003700|GO:0006355
Amo03g2663 179 MobiDBLite consensus disorder prediction 92 111 - -
Amo03g2663 179 MobiDBLite consensus disorder prediction 151 179 - -
Amo03g2663 179 SUPERFAMILY DNA-binding domain 22 80 IPR016177 GO:0003677
Amo03g2663 179 ProSiteProfiles AP2/ERF domain profile. 22 79 IPR001471 GO:0003700|GO:0006355
Amo03g2663 179 Gene3D AP2/ERF domain 21 81 IPR036955 GO:0003700|GO:0006355
Amo03g2663 179 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ABR1 13 173 - -
Amo03g2663 179 PANTHER DNA-BINDING DOMAIN 13 173 IPR044808 GO:0003700|GO:0009873
Amo03g2663 179 Pfam AP2 domain 22 71 IPR001471 GO:0003700|GO:0006355
Amo03g2663 179 PRINTS Ethylene responsive element binding protein signature 45 61 IPR001471 GO:0003700|GO:0006355
Amo03g2663 179 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g2663 Amo-Chr3 115065321 115067730 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g2663 1 131 AP2-EREBP Transcription Factor Family AT5G13330 61.364 4.63e-44 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Amo03g2663 AP2 2.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g2663 - - gmx:100793410 155.221
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3619 13 122895989 122896778 Amo03g2663 03 115065321 115067730 hybridization
Amo03g2663 03 115065321 115067730 Amo08g2361 08 37016804 37019067 PCT
Amo08g2361 08 37016804 37019067 Amo03g2663 03 115065321 115067730 PCT