Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g2655 ATGCCTTCTCCAATGGTGGATCAGAGGGGAGTTTCTGCTTCATCTCACTTTTTTGATGACATTTCTTTTCGTTCTGAGAGGGATGCTGGAATACGGAAGTTCAAATCCATTCATGATCAATATCCACAAGGAAAAAATGGAATGATAGCATCCCCTGGAAGCAATTTGAATTCTTCATCTGTACTGGAAAGAAGTGCAAAATCTGGTTTGCCAATGTCATGCACCAGTCTATCTATTGAAAATGTGGAACAGCTAAAATTTGGTGGTGAAGGCATTTTTGATGCGCTGATGGTTTCCAAGGAATCATCACATTATCATCACAGATCAAGGTCTGATTTATGTATGCGCTCCGGACCGAACTCACCTGGTGTAATCGGGGACAAGTTTGTTTCCAGTGCAGCCACATGTGAAAGTACTTTATTCTCGAGCTCATTGTCTGATATGTTTTGCCAAAAGTTGAGGTTGTTCGGGAAAGATGCTTTATCTGATCAGCCCGATATTATTGATTCTGTTCCCGAGGAAGAGCCTTATAAATCTCTTGAAGAAATAGAGGCTGAAACTATAGGGAATCTCCTTCCTGATGAAGATGATCTGTTTTCTGGTGTCAATGATGAGTCAAGATATAACAATACTAATGCCAGAAAAAATGATGACTTGGAGGATTTTGACTTGTTTAGCAGTGGGGGAGGCATGGAGCTGGAAAGAGATGAACATCTGAATGCAGGATTAAGAACTAGTGCTCTGGAGGGAGATTCAGGTTTTGTTGGAGGTCCTAAAGGAAAATTTCCTTTTGTCACACAACCTTCTAGAACACTCTTTGTTCGGAACATTAATAGCAACGTAGACGACTCTGAGCTAAAGGCTCTCTTTGAGCAATATGGAGATATTAGAACCATGTATACAGCTTGTAAACATCGTGGTTTTGTCATGATTTCTTATTTTGACCTAAGAGCTGCACAAAGTGCAACGCAAGAACTTCAAAATTGGCCACTGAGGTTAAGGAAACTTGATATACATTATTCAATTCCAAAGGTCAATGCTTCTGAGAAGGATATTGGCCATGGTATGCTGATGCTATCTGGTCTTGATTCATCTATTTCAAATGATGAACTCAAACAGATTTTTGGATTTTATGGAGATATTAAAGAAATTTTTGAATCTCCTGAAATGAAACAGCACAAATTTATAGAGTTTTATGATGTACGAGCTGCAGAAGCTGCTCTTCGTGCATTGAACAGGGTTGACATTGCTGGGAAGCAGATCAAGATTGAACCAGGACATCCTAGTTTGATGCAGCAGTCTCATAAGGGGCAAGATGAACCAGATCTTGGTCAGAGTATTATTGACAACTTAGCACTGAGACAGAAGACAACTGTGTCTCCTGGAGTGATTGGGTCTGGCTTGGAAAATGGTTACAATCAGGGATTTCAATCTGGAATGGCGCAACCTTTAAACACATATACTGATAATGCATTTGGACATATAAATTCTAGCATTCACAACACAGTGAGAGGGTCATCAGCTTCAAATGTTTCTGGCGTTTCTGAGTCCAATATATTTGTTGACGCAATAAAATTTGCTTCTAGTCCGAGATTTCATCCTCATTCCTTACCCGAGTATCATGATACTTTAGCTAATGGTAGTCCTTATAACTTTTCAAGCACCATTAGCAACATGACTAGCAGTGTCAATACTGGAGTGACCGAAGCCTCTGACAGCAGGCACAATCAGGGAATGAGCTCAACTGGGAACTTAGCAGAATTTAATGCAGGAGGAAATGGGATCCGGTCACATCATGGACTTTATCAGATGTGGAACAGCTCCAATTTGCATCAGCAGTCTTCGTCAGGTACCATGCTGTGGCAGAAAAGACCATCATTTGTTAATCTTCCACAGATGCCAAGCTTTGCCAGAACACCACCTCATATGTTGAGGTCACAACACATGGACCACAATGTTGCATCAGCACCAGTGTCACCTTGGGGAAGGCAACATTCGCACCTAGCAGAATCCCCTGATGCTTCTGGTTTTGTGGGAAGTGGAGGTTTTCAGGGTTCCTGGCAATTGCTTTCTCCAGAATTTTCTCCTCGCTTGTTTCCTCATGCAAGTCCTAAAGGCACTGAACTGCCATCCAATGCTGGGCAGAGTTCTCCTAAGCATCATGGTTTCCCTGGAAGACATTCTATGAATTCAACGTCAAAATTTGATTCTGCCAATGAACGGATGAGAAGCCTTTATCACCGTAGGAGTGAAACAAACAATGCTGATAAAAAACAATTTGAGCTTGACCTAGGTCGCATAATGCAGGGGGAAGACACCCGAACAACACTTATGATAAAAAATATTCCCAACAAGTATACCTCAAAGATGCTTCTTGCTGCTATTGATGAGCGTTGTAGGGGAACTTACGATTTTCTGTATTTGCCAATTGACTTCAAGAATAAATGTAATGTTGGTTATGCATTTATAAATATGATCGATGCTGCTCAAATTATTCCTTTCCACCAGGCTTTTAATGGGAAAAAATGGGAGAAGTTCAATAGTGAAAAGGTAGCCTCACTTGCATATGCCCGAATTCAAGGAAAAGCTTCTCTCATTGCCCATTTCCAGAACTCAAGCCTGATGAATGAAGATAAACGTTGCCGCCCTATTCTCTTCCACACTGATGGTCCAAATGCTGGTGATCCAGAGCCTTTTCCCATGGGTACCAATATTAGAGTGAGACCTGGAAAATCTCGCACTGCTGGTAATGACGAAAGTCGCAACCAACCAAGTCCAAGAATTTTGATAAATGTAGAGTCTCCTAATGGACTTGACTCTGCTTAG 2826 0.4126 MPSPMVDQRGVSASSHFFDDISFRSERDAGIRKFKSIHDQYPQGKNGMIASPGSNLNSSSVLERSAKSGLPMSCTSLSIENVEQLKFGGEGIFDALMVSKESSHYHHRSRSDLCMRSGPNSPGVIGDKFVSSAATCESTLFSSSLSDMFCQKLRLFGKDALSDQPDIIDSVPEEEPYKSLEEIEAETIGNLLPDEDDLFSGVNDESRYNNTNARKNDDLEDFDLFSSGGGMELERDEHLNAGLRTSALEGDSGFVGGPKGKFPFVTQPSRTLFVRNINSNVDDSELKALFEQYGDIRTMYTACKHRGFVMISYFDLRAAQSATQELQNWPLRLRKLDIHYSIPKVNASEKDIGHGMLMLSGLDSSISNDELKQIFGFYGDIKEIFESPEMKQHKFIEFYDVRAAEAALRALNRVDIAGKQIKIEPGHPSLMQQSHKGQDEPDLGQSIIDNLALRQKTTVSPGVIGSGLENGYNQGFQSGMAQPLNTYTDNAFGHINSSIHNTVRGSSASNVSGVSESNIFVDAIKFASSPRFHPHSLPEYHDTLANGSPYNFSSTISNMTSSVNTGVTEASDSRHNQGMSSTGNLAEFNAGGNGIRSHHGLYQMWNSSNLHQQSSSGTMLWQKRPSFVNLPQMPSFARTPPHMLRSQHMDHNVASAPVSPWGRQHSHLAESPDASGFVGSGGFQGSWQLLSPEFSPRLFPHASPKGTELPSNAGQSSPKHHGFPGRHSMNSTSKFDSANERMRSLYHRRSETNNADKKQFELDLGRIMQGEDTRTTLMIKNIPNKYTSKMLLAAIDERCRGTYDFLYLPIDFKNKCNVGYAFINMIDAAQIIPFHQAFNGKKWEKFNSEKVASLAYARIQGKASLIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPMGTNIRVRPGKSRTAGNDESRNQPSPRILINVESPNGLDSA* 942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g2655 941 Gene3D - 264 353 IPR012677 -
Amo03g2655 941 SUPERFAMILY RNA-binding domain, RBD 268 425 IPR035979 GO:0003676
Amo03g2655 941 MobiDBLite consensus disorder prediction 916 941 - -
Amo03g2655 941 SMART rrm1_1 271 339 IPR000504 GO:0003723
Amo03g2655 941 SMART rrm1_1 776 852 IPR000504 GO:0003723
Amo03g2655 941 SMART rrm1_1 356 424 IPR000504 GO:0003723
Amo03g2655 941 MobiDBLite consensus disorder prediction 566 588 - -
Amo03g2655 941 CDD RRM1_MEI2_like 269 344 IPR034453 -
Amo03g2655 941 MobiDBLite consensus disorder prediction 889 941 - -
Amo03g2655 941 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 270 343 IPR000504 GO:0003723
Amo03g2655 941 SUPERFAMILY RNA-binding domain, RBD 776 861 IPR035979 GO:0003676
Amo03g2655 941 MobiDBLite consensus disorder prediction 566 590 - -
Amo03g2655 941 PANTHER RNA RECOGNITION MOTIF-CONTAINING 2 934 - -
Amo03g2655 941 CDD RRM3_MEI2_like 777 862 IPR034454 -
Amo03g2655 941 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 272 332 IPR000504 GO:0003723
Amo03g2655 941 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 357 422 IPR000504 GO:0003723
Amo03g2655 941 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 355 428 IPR000504 GO:0003723
Amo03g2655 941 Pfam RNA recognition motif 2 774 870 IPR007201 -
Amo03g2655 941 Gene3D - 354 447 IPR012677 -
Amo03g2655 941 PANTHER RNA RECOGNITION MOTIF 2, NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 2 934 - -
Amo03g2655 941 MobiDBLite consensus disorder prediction 697 737 - -
Amo03g2655 941 MobiDBLite consensus disorder prediction 654 675 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g2655 Amo-Chr3 114936754 114944738 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g2655 268 438 Eukaryotic Initiation Factors Gene Family AT1G71770 24.615 2.51e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g2655 - - gmx:106798747 1331.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3607 13 122623341 122626986 Amo03g2655 03 114936754 114944738 hybridization
Amo03g2655 03 114936754 114944738 Amo08g2366 08 37058161 37065388 PCT
Amo08g2366 08 37058161 37065388 Amo03g2655 03 114936754 114944738 PCT