Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g2647 ATGGAGTCGGACGAGAACGACTTTCAGGAAGACGATACAGAACACGACCGTCATGCAGAGGCCGATGTTGACAATGGGGATGCGGTTGAATTGGAAGACGGTTTGGACGGCGCCGGAGGAATGTCTGAGAATTATGCGAAAGACGAGTTTTACGCCGTTGATTCTGGCGAGTCCATAGGTTGGATTGATTTTTTGAACTTGAGCGCGGAGGATGTTCTCCGGTGTAATTTCGCAGATGTTGACATTGCATTTGAGTTCTATCAGCAATATGCAAAGCACCATGGATTCGGCGCGAGACGTTCCAGAAGCGAAAAACGGTTCCGATCCCCGAAGTTCTACTCGATGCCTAACTGGAAAAAGAGGCCAAGGGCCGAGACACGGTGTGGATGCCCTGCAAGGATGTTACTCCGCATGGACGATGAATCAGGACGTTGGCACGTTGCGTTCTTTTCAGACGCGCATAACCACCACGTTCTTGAGTTGCGATTTTCTTCCATGCTCCCGGGCCATCGGAGGATGAGCGAAGCGGACATCGAGCAGATGAACGACATGCGCAAAGGGGGCATTGGCTCTCGATACAGCTACACTGAGTTTTTACGTCATTTCCATCGATGCTTGATGTTCGTCCGCGCAAAGGAGGTGGAGGCTGATTTCGAGTGCGCAAAGGGTGACCCTGTTATGACCACCAACCTGAAACAGCTGGAGCGGAGTGCAGCCGACAACTACACTCGTGCGATATTCTATTTGTTTGTTCCCATTCTTGACAGGGCCTGTGCAATGAGGGTGGTTGACTCTGAAGACAACGGTTCCTATTTTATTCACACCGTCTCTCGATACGGAACTCCGGGGAAGGAGTGGCGTGTTGTTGCAACGTCTGATACGAGGGAGGTCCGATGCACGTGCATGAGAATGGAATGTTTCGGGGTCCCCTGCGAACATATAATTACGGTTCTTGTTCTTAACAATGTTCATGAGATCCCGAGGTCTCTGATATTACCGAGATGGACCAAGGATGCAAAACTCGTGGCGGTGGAGTCGATGGGCGTGATTTGGGATTCTGTACAACTGACGCAACACTGGTGCCTGATGGATTGGTACCAAAAAGTGTGCAAGATTGCATGTCACAGCACCGAAAAGTTCCAGTTTGCAAGAGACATAGCCGTGCTGATGCTGAAGCACTTCGAGAACGAAGATGCAGGGAACACCAGTTTTCCACACGAGGGGCCACCTACTGAGGGTGGCAGACCCCCTGTGCGAAATCCACCCAGGCGCAATACAAAGGGTAACAGTGCTCATGGTGGAAAGAAGACCGAGCGATGTCGTTTGTGCCGGGAGGTGGGACACAACAGGACGACGTGTCCGGAGCGTCGCACAATGGAACCATCCAGCTCAGTTGCAGAAGACATGGATTCGATGGACACTGACATGGTGGGTTGGTCGCTCTATAGACGATGTAGTTAA 1461 0.514 MESDENDFQEDDTEHDRHAEADVDNGDAVELEDGLDGAGGMSENYAKDEFYAVDSGESIGWIDFLNLSAEDVLRCNFADVDIAFEFYQQYAKHHGFGARRSRSEKRFRSPKFYSMPNWKKRPRAETRCGCPARMLLRMDDESGRWHVAFFSDAHNHHVLELRFSSMLPGHRRMSEADIEQMNDMRKGGIGSRYSYTEFLRHFHRCLMFVRAKEVEADFECAKGDPVMTTNLKQLERSAADNYTRAIFYLFVPILDRACAMRVVDSEDNGSYFIHTVSRYGTPGKEWRVVATSDTREVRCTCMRMECFGVPCEHIITVLVLNNVHEIPRSLILPRWTKDAKLVAVESMGVIWDSVQLTQHWCLMDWYQKVCKIACHSTEKFQFARDIAVLMLKHFENEDAGNTSFPHEGPPTEGGRPPVRNPPRRNTKGNSAHGGKKTERCRLCREVGHNRTTCPERRTMEPSSSVAEDMDSMDTDMVGWSLYRRCS* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g2647 486 MobiDBLite consensus disorder prediction 1 40 - -
Amo03g2647 486 Pfam FAR1 DNA-binding domain 85 159 IPR004330 -
Amo03g2647 486 ProSiteProfiles Zinc finger SWIM-type profile. 286 322 IPR007527 GO:0008270
Amo03g2647 486 MobiDBLite consensus disorder prediction 11 25 - -
Amo03g2647 486 PANTHER OS01G0607050 PROTEIN 75 158 - -
Amo03g2647 486 PANTHER OS01G0607050 PROTEIN 179 399 - -
Amo03g2647 486 MobiDBLite consensus disorder prediction 399 437 - -
Amo03g2647 486 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 75 158 IPR031052 GO:0006355
Amo03g2647 486 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 179 399 IPR031052 GO:0006355
Amo03g2647 486 SUPERFAMILY Retrovirus zinc finger-like domains 425 460 IPR036875 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g2647 Amo-Chr3 114732272 114734587 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo03g2647 FAR1 5.2e-10 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g2647 - - adu:107493880 582.408