Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g2643 ATGCATTTCGCAAAGCTCGATGATTCCCCCATGTTCCGCCAGCAGCTGCAGTGCTTGGAGGAAAGTGCAGAATCATTACGCATCAGATGCTGCAAATTTCACAAAGGATGTCGAAAATATACGGAAGGATTAGGAGAGGTATATGAAGGGGACGTGGCATTTGCTACTGCCCTTGAAGATTTTGGAAGTGGCCATAATGATCCTCATTTTGCTGCTTTAGGAGAACCTGTGATGAGCAAATTTACTACTGCTTTGAGAGAAATCAGTACATACAAAGAACTTCTTCGGTCACAGGTAGAGCAGATGCTTACTGACCGGTTACAACACATTATGAATGTTGATATCCATGAAGTCAAGGAAGCTCGGAAGCGTTTTGACAAAGCTTCTGCTGTATATGATCAGGCACGAGAAAAGTTTATGTCACTGAAAAAAAGCACAAAGCCTGATATTGCCACTACCATGGAAGAGGAATTGCAGAATGCAAGAACCTCATTTGAAGAAGCACGTTTCAATCTGGTTGTTGCTCTCAATAATATTGAGGCCAAAAAGAGATTTGAGTTCTTAGAGGCTATCACTGGAATCATGGATGCTCATCTTCGATACTTTCAACAGGGATATCAACTATTACATCAGATGCAACCTTTCTTTAGCGAGATTTTGGATTATGTACAGCAATCAAGAGAAAGTTATGATGAAGAGCAGATTTCTCTTTATAAAAGAATGGAAGAGTACAAAAAACGAGTTTATCAAGAGAGTAGAATGTCTTTAAATGGCCCTTATGGTTCTCCTAATGGAGACTCTGTCCATCCTTTTTCTAGGATATCAAATGAAGTGGCTGATGTAGTGAAGGAATCTGCTGCAAATGGAAAGGTTGAAATCATTAGACAAGGTTTTCTCTCAAAGCGATCCTCTAATTTAAGGGGTGACTGGAAAAGAAGGTATTTTGTTCTTGATAGTCGGGGAATGCTATACTACTATCGCAAACCATGGAATGGTGGCACTGAAAATGGTTCTGGGCTTCTAAGTCGATGGCTTTCTTCTCATTACCATGGAGGTGTCCATGATGAAAGATATGCAGCACGTCACACAGTAAACCTGCTGACATCCACAATTAAAGCTGATTCTGATCAGTCAGATTTAAGATTCTGCTTCAGGATTATCTCACCATCAAAGAACTATACATTGCAGGCAGAAAATGCAGTGGACCAGATGGATTGGATGGAAAAGATAACCGGAGTCATTGCATCCTTGTTGAGCGTCCAGTCACTGGGAACGCCTCCCTGTGCTAAGCGAAAAACTGGAGACAGTGACACTGCTAAGAAGACTGATGTGCCAGAAAGTTCTCTAGATGATGGTCACACCGTGACCGACAAGTCTGAATCAAGGAAATACACTACTCCCGGTAGCCAATATCGTACATATAAGAGTTTGCAGTTGCAAAGACACAATATGAAAAGTGAAAAGCCAATTGAATTTCTAAGAAGGGTGAGTGGAAATGACAAGTGTGCAGATTGTGGTAAACCTGAACCAGATTGGGCATCCTTAAACCTTGGCATCCTTATATGCATTGAATGTTCCGGTGTTCATCGTAATCTTGGAGTACATATATCAAAAGTAAGATCATTGACACTTGATGTGAAAGTCTGGGACCCTTACGTCTTAGCCATGTTTAAGACACTGGGCAATTACTTTGCAAACTCAGTTTGGGAAGAGTTAGCTTCAAAGAGTACTTTGCAAACTGATGATAATGCATCTGTTGGTTCATCCAATGCCAGGGGAGACAAAGTAAAAAAACCGAAACCTGATGATTCTATTTCATTAAAGGAGAAGTTCATTCATGCAAAGTACTCTGAGAAAATGTTCATTTGCCGAACAAAAGAAAGCCACTCTGTCCATTCTGTGGCAAAAAAAGTGTGGGAAAGCATTTGTGCCAATGACATGAAAGCAGCGTACCGGCATATTGTCAAGTCAGGTGTGGATGTCAATGCCATCACTGGCCACACATTATCTGAAGGTTCTTGCAACATGACTTCATCAGATAAATCAAACATATCATCACCATCTCAACGTGAAAATCAGCTGATGAATGAGAACATACAACTTGGTTCTGGTGTGCTTCACCTGGCATGCATCACTGCTGATGCTGGTATGGTGGAGTTGCTCCTACAATATGGTGCAGACATTAATGCTTGCGATTCGAAAGGTCAGACACCACTTCATTACAGTATTACTGCAGGAAATACTGAAGCTGCAAAAGTGCTACTTATGAGAGGGGCCAATTCAAATGCTGCAGATAAAGAAGGCAACACTCCTATTAAGCTAGCATCACAATCCAACTCCATTGACGCTGAAACCTTGGCTCTCTTGGCAAGAAGATGA 2379 0.4132 MHFAKLDDSPMFRQQLQCLEESAESLRIRCCKFHKGCRKYTEGLGEVYEGDVAFATALEDFGSGHNDPHFAALGEPVMSKFTTALREISTYKELLRSQVEQMLTDRLQHIMNVDIHEVKEARKRFDKASAVYDQAREKFMSLKKSTKPDIATTMEEELQNARTSFEEARFNLVVALNNIEAKKRFEFLEAITGIMDAHLRYFQQGYQLLHQMQPFFSEILDYVQQSRESYDEEQISLYKRMEEYKKRVYQESRMSLNGPYGSPNGDSVHPFSRISNEVADVVKESAANGKVEIIRQGFLSKRSSNLRGDWKRRYFVLDSRGMLYYYRKPWNGGTENGSGLLSRWLSSHYHGGVHDERYAARHTVNLLTSTIKADSDQSDLRFCFRIISPSKNYTLQAENAVDQMDWMEKITGVIASLLSVQSLGTPPCAKRKTGDSDTAKKTDVPESSLDDGHTVTDKSESRKYTTPGSQYRTYKSLQLQRHNMKSEKPIEFLRRVSGNDKCADCGKPEPDWASLNLGILICIECSGVHRNLGVHISKVRSLTLDVKVWDPYVLAMFKTLGNYFANSVWEELASKSTLQTDDNASVGSSNARGDKVKKPKPDDSISLKEKFIHAKYSEKMFICRTKESHSVHSVAKKVWESICANDMKAAYRHIVKSGVDVNAITGHTLSEGSCNMTSSDKSNISSPSQRENQLMNENIQLGSGVLHLACITADAGMVELLLQYGADINACDSKGQTPLHYSITAGNTEAAKVLLMRGANSNAADKEGNTPIKLASQSNSIDAETLALLARR* 793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g2643 792 PRINTS HIV Rev interacting protein signature 499 518 IPR001164 GO:0005096
Amo03g2643 792 PRINTS HIV Rev interacting protein signature 518 535 IPR001164 GO:0005096
Amo03g2643 792 PRINTS HIV Rev interacting protein signature 541 562 IPR001164 GO:0005096
Amo03g2643 792 Gene3D - 285 424 IPR011993 -
Amo03g2643 792 CDD BAR_SFC_plant 15 215 IPR035670 -
Amo03g2643 792 SMART arf_gap_3 487 628 IPR001164 GO:0005096
Amo03g2643 792 CDD ArfGap 493 616 - -
Amo03g2643 792 Pfam PH domain 294 414 IPR001849 -
Amo03g2643 792 Pfam Putative GTPase activating protein for Arf 489 622 IPR001164 GO:0005096
Amo03g2643 792 ProSiteProfiles Ankyrin repeat profile. 701 733 IPR002110 GO:0005515
Amo03g2643 792 Gene3D Arfaptin homology (AH) domain/BAR domain 4 250 IPR027267 -
Amo03g2643 792 Gene3D Arf GTPase activating protein 469 627 IPR038508 -
Amo03g2643 792 ProSiteProfiles Ankyrin repeat profile. 734 766 IPR002110 GO:0005515
Amo03g2643 792 ProSiteProfiles ARF GTPase-activating proteins domain profile. 487 631 IPR001164 GO:0005096
Amo03g2643 792 SMART PH_update 293 417 IPR001849 -
Amo03g2643 792 MobiDBLite consensus disorder prediction 580 603 - -
Amo03g2643 792 SMART ANK_2a 701 730 IPR002110 GO:0005515
Amo03g2643 792 SMART ANK_2a 734 763 IPR002110 GO:0005515
Amo03g2643 792 MobiDBLite consensus disorder prediction 433 460 - -
Amo03g2643 792 ProSiteProfiles Ankyrin repeat region circular profile. 701 732 - -
Amo03g2643 792 SUPERFAMILY ArfGap/RecO-like zinc finger 487 623 IPR037278 -
Amo03g2643 792 Gene3D - 628 789 IPR036770 -
Amo03g2643 792 Coils Coil 118 138 - -
Amo03g2643 792 SUPERFAMILY PH domain-like 203 414 - -
Amo03g2643 792 Pfam BAR domain of APPL family 6 233 - -
Amo03g2643 792 PANTHER CENTAURIN/ARF 1 792 IPR045258 GO:0005096
Amo03g2643 792 MobiDBLite consensus disorder prediction 426 468 - -
Amo03g2643 792 Pfam Ankyrin repeats (3 copies) 706 782 IPR002110 GO:0005515
Amo03g2643 792 CDD PH_ACAP 295 419 - -
Amo03g2643 792 SUPERFAMILY BAR/IMD domain-like 6 315 IPR027267 -
Amo03g2643 792 ProSiteProfiles PH domain profile. 292 415 IPR001849 -
Amo03g2643 792 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD10 1 792 - -
Amo03g2643 792 SMART 5bar 2 218 IPR004148 GO:0005515|GO:0005737
Amo03g2643 792 ProSiteProfiles Ankyrin repeat region circular profile. 734 766 - -
Amo03g2643 792 SUPERFAMILY Ankyrin repeat 643 782 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g2643 Amo-Chr3 114669423 114675102 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g2643 469 622 C2H2 Transcription Factor Family AT3G07940 37.975 1.20e-22 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g2643 K12489 - gmx:100792517 1129.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3594 13 122330704 122336829 Amo03g2643 03 114669423 114675102 hybridization
Amo03g2643 03 114669423 114675102 Amo08g2382 08 37362665 37372391 PCT
Amo08g2382 08 37362665 37372391 Amo03g2643 03 114669423 114675102 PCT