Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g2636 ATGTCGCTGACGGAAAAGGGAACTGCTGCCGCCGTCACATGCCTTGCCATTGCCGTCGATTTCGCCAGGAGAAGATGCGTGGAGAGAAGAGCCAGCTGCCATCGCATCTGCTGCAGGCTCGCCATCATCGCCATCATGGAGTGCCAGGAGGCCGTCACCGGTGCGAGCTCACGGAGGGAGAGATGGCACAAACCCTTGTTGGTTCTTTGTGAAAGGCCTCTTATGAGATTAGAAAACTTGGCACCCTTTCTTTTTCCAGCTGAGTTAATAAGACTCAAAACACCTTCCCAGGTTATGGCGTTGGATAAATTTTATAACGAGCACAAATATCCCACGGAGAAAATGAAACAAGATCTTGCTAAGGAGTTAGGGTTGACTGAGAAGCAAATTTCTGGATGGTTTTGCCACAGAAGGTTAAAAGATAAAAGGTTGTTGAAAGATGAAGCCTCTGCTCCCATTCCCTCTTGTCATGAAAGATGA 480 0.4813 MSLTEKGTAAAVTCLAIAVDFARRRCVERRASCHRICCRLAIIAIMECQEAVTGASSRRERWHKPLLVLCERPLMRLENLAPFLFPAELIRLKTPSQVMALDKFYNEHKYPTEKMKQDLAKELGLTEKQISGWFCHRRLKDKRLLKDEASAPIPSCHER* 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g2636 159 Pfam Homeodomain 94 143 IPR001356 GO:0003677
Amo03g2636 159 SMART HOX_1 87 148 IPR001356 GO:0003677
Amo03g2636 159 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 91 150 - -
Amo03g2636 159 SUPERFAMILY Homeodomain-like 91 148 IPR009057 -
Amo03g2636 159 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 91 150 - -
Amo03g2636 159 ProSiteProfiles 'Homeobox' domain profile. 94 144 IPR001356 GO:0003677
Amo03g2636 159 CDD homeodomain 91 143 IPR001356 GO:0003677
Amo03g2636 159 Gene3D - 86 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g2636 Amo-Chr3 114347382 114348475 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g2636 91 151 Homeobox Transcription Factor Family AT4G03250 73.770 1.16e-27 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Amo03g2636 Homeodomain 3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g2636 - - aip:107645585 114.39