Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g2632 ATGGCATCAACAGAGGAATTGATGAACAGAAAAGTGGAAACCAACAACAACAATGGTGGAATGAACGCAGCAGAGGCTCAAAATGCTTCTTCTTCTTCTTCATCGTCATCAGCTAGAGACGCGGAAGCTGCGCTTTACAAGGAGCTATGGCACGCATGTGCAGGTCCCCTTGTGACAGTGCCGAAAGAAGGAGAGCTCGTCTTCTATTTCCCTCAAGGACATATTGAGCAGGTGGAGGCGTCCACGAATCAGGTTGCGGAGCAGCATATGCCGGTTTACGATCTCCCGTCCAAGATCCTTTGTCGCGTCATCAACGTCATGCTCAAGGCGGAGCCGGACACGGATGAGGTGTTTGCTCAATTGACTTTACTTCCGGAGCCAAATCAAGATGAGAATGCCGTGGAGAAAGCGACTCCGCCAGCTCCGCCGCCACGATTTCACGTGCATTCGTTTTGCAAGACTCTAACGGCATCCGACACTAGTACTCATGGTGGATTTTCAGTGTTGAGACGACACGCTGACGAGTGTCTTCCTCCCTTGGACATGTCAAAGCAGCCACCCACCCAGGAACTGGTGGCCAAGGATCTCCATGGAAATGAGTGGCGATTCAGGCATATCTTTCGCGGTCAACCGCGCAGACACTTACTACAAAGTGGTTGGAGTGTTTTTGTCAGCTCCAAGAGGCTGGTTGCTGGGGATGCATTTATATTTCTGAGAGGTGAGAATGGGGAACTTCGAGTTGGTGTCAGGCGCGCAATGAGACAGCAGGGTAATGTTCCATCATCAGTTATCTCTAGCCACAGCATGCATCTTGGTGTGCTTGCAACTGCATGGCATGCCATCTTGACTGGGACCATGTTCACTGTTTATTACAAGCCGAGGACCAGTCCAGCTGAATTCATTGTACCATATGATCAGTATATGGAGTCTCTTAAAAACAATTATACTATAGGATTGCGGTTCAAAATGAGGTTTGAAGGTGAAGAGGCTCCTGAGCAAAGGTTCACTGGTACTATTGTTGGGATTGAAGATGCCGACTCCAAGAGGTGGCCAGAATCCAAATGGAGAAGTCTAAAGGTGAGATGGGACGAAACATCTACCATACCTCGTCCTGAGAGAGTTTCCCCTTGGAAAATAGAGCCTGCTCTTGCTCCGCCAGCTCTAAACCCTCTTCCAATGCCCAGGCCTAAAAGGCCTCGTTCGAATGCCATTCCATCATCCCCAGATTCTTCTGTTCTTACTCGTGAAGCATCATCTAAAGCGAGCGTAGACCCTTTACCACCAAGCGGATTTCCAAGGGTCTTGCAAGGTCAAGAATTCTCGACCTTGCGGGGCAACTTTGCAGAAAGTAATGAGTCGGATACTGCTGAGAAGTCTGTCGTGTGGCCACCAGCAGTAGATGATGAGAAGATTGATGTTGTTTCTACTTCTAGAAGGTATGGGCCAGAGAGCTGGATGTCAATGGGGAGGCATGAGCTGCCATACTCGGATCTTCTTTCAGGCTTTGGAGCCAATGGAGATCCTTCTTCCCGGTCATCCTTGATTGATCAGTCTGATTCTGTTGCTAACCCTGGTAGAAAGCATTTATTAGATCGTGAAGGCAAAACTAATGTGCCAAGTAGCAGTCCATGGTCTGTAATACCTTCTAGTTTATCACTCAACCTCTTGGAGCCTAATGCAAAAGTTTCTGCCCAAGGTGGTGATGCAGCTTACCAAATTCGAGGGAACTTGAGGTATGGTGCATTTGGTGAATACCCTGTGCTTCATGGTCATAAAGTTGAGAATTCACATGGAAACTTGTCAATGCCACCACCACCTCTTGCTCAATATGAGAGTCCTCGTTCCAAGGAACTGCTGCCTAAACCGAAATCAGCGAAAACCTCTGATGTTGCAAGACCCAAAGATGGTGACTGTAAACTATTTGGCATCTCACTTCTCAGTAGCCCACCTGCACCAGAGACTCCTACATCACAAAGAAATGTTGCAAGTGAGACAGTGAGTCACACGTACCCCACACACCAGCATCGTACATTTGAAAATGAACAGAAGTCTGAAAATTCAATGGGCTCTAAAGCAGCAGATGGTCTAGCTGTAGTCGATGAGCTGCATCTGAGAGATGTTCAACTCAAACCACATAGTGGTTCTGCTAGGAGTTGCACTAAAGTTCACAAGAAGGGGATTGCCCTTGGTAGGTCAGTGGATCTTACGAAATTCAGTGGCTATGGTGAATTAATTGCTGAATTGGATCAGTTGTTTGAATTTGGGGGTGAACTGATTTCTGCCAAAAAGGACTGGCTTACTGTATACACTGACAATGAGGGCGACATGATGCTTGTTGGTGATGATCCATGGCAGGAGTTTTGTGCAATGGTACGTAAAATTTACATCTATCCCAGAGAGGAGATCCAGAAAATGAGCCCTGGTACTTTAAGTTCAAAAAACGAAGAGAACCAGTTGGCTAGTGAAGGTGTTGATGCACAAGAAATCAGATGCCAGCCGCATCACCCAACTTCAACGCCTGATCATTCATAG 2532 0.4724 MASTEELMNRKVETNNNNGGMNAAEAQNASSSSSSSSARDAEAALYKELWHACAGPLVTVPKEGELVFYFPQGHIEQVEASTNQVAEQHMPVYDLPSKILCRVINVMLKAEPDTDEVFAQLTLLPEPNQDENAVEKATPPAPPPRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSKQPPTQELVAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAILTGTMFTVYYKPRTSPAEFIVPYDQYMESLKNNYTIGLRFKMRFEGEEAPEQRFTGTIVGIEDADSKRWPESKWRSLKVRWDETSTIPRPERVSPWKIEPALAPPALNPLPMPRPKRPRSNAIPSSPDSSVLTREASSKASVDPLPPSGFPRVLQGQEFSTLRGNFAESNESDTAEKSVVWPPAVDDEKIDVVSTSRRYGPESWMSMGRHELPYSDLLSGFGANGDPSSRSSLIDQSDSVANPGRKHLLDREGKTNVPSSSPWSVIPSSLSLNLLEPNAKVSAQGGDAAYQIRGNLRYGAFGEYPVLHGHKVENSHGNLSMPPPPLAQYESPRSKELLPKPKSAKTSDVARPKDGDCKLFGISLLSSPPAPETPTSQRNVASETVSHTYPTHQHRTFENEQKSENSMGSKAADGLAVVDELHLRDVQLKPHSGSARSCTKVHKKGIALGRSVDLTKFSGYGELIAELDQLFEFGGELISAKKDWLTVYTDNEGDMMLVGDDPWQEFCAMVRKIYIYPREEIQKMSPGTLSSKNEENQLASEGVDAQEIRCQPHHPTSTPDHS* 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g2632 843 ProSiteProfiles PB1 domain profile. 717 799 IPR000270 GO:0005515
Amo03g2632 843 MobiDBLite consensus disorder prediction 506 520 - -
Amo03g2632 843 SMART B3_2 151 253 IPR003340 GO:0003677
Amo03g2632 843 SUPERFAMILY CAD & PB1 domains 720 794 - -
Amo03g2632 843 MobiDBLite consensus disorder prediction 1 36 - -
Amo03g2632 843 Gene3D - 314 384 - -
Amo03g2632 843 MobiDBLite consensus disorder prediction 805 821 - -
Amo03g2632 843 SUPERFAMILY DNA-binding pseudobarrel domain 147 280 IPR015300 -
Amo03g2632 843 ProSiteProfiles B3 DNA-binding domain profile. 151 253 IPR003340 GO:0003677
Amo03g2632 843 Pfam AUX/IAA family 760 803 IPR033389 -
Amo03g2632 843 MobiDBLite consensus disorder prediction 383 434 - -
Amo03g2632 843 MobiDBLite consensus disorder prediction 595 633 - -
Amo03g2632 843 MobiDBLite consensus disorder prediction 403 418 - -
Amo03g2632 843 MobiDBLite consensus disorder prediction 669 688 - -
Amo03g2632 843 Pfam Auxin response factor 277 359 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Amo03g2632 843 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 30 825 IPR044835 GO:0003677|GO:0006355|GO:0009725
Amo03g2632 843 MobiDBLite consensus disorder prediction 383 401 - -
Amo03g2632 843 Gene3D - 713 806 - -
Amo03g2632 843 PANTHER AUXIN RESPONSE FACTOR 2 30 825 - -
Amo03g2632 843 MobiDBLite consensus disorder prediction 506 543 - -
Amo03g2632 843 Pfam B3 DNA binding domain 151 252 IPR003340 GO:0003677
Amo03g2632 843 CDD B3_DNA 149 251 IPR003340 GO:0003677
Amo03g2632 843 Gene3D - 148 253 IPR015300 -
Amo03g2632 843 MobiDBLite consensus disorder prediction 616 633 - -
Amo03g2632 843 MobiDBLite consensus disorder prediction 805 843 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g2632 Amo-Chr3 114293122 114310261 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g2632 23 830 B3 DNA Binding Superfamily AT5G62000 66.182 0.0 1086
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Amo03g2632 B3 1.6e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g2632 - - gmx:100815956 1356.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo03g2632 03 114293122 114310261 Amo08g2386 08 37464248 37468415 PCT