Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g2631 ATGTCCAGCACAAACAGCACTTGTCTCATGGAAGAAAGAGAGCTCTCTGATGCCAACAACACCTATCAACTTGTCCCTATTCCTATCATGCCTCCTCCTCAGGTAGTCAATGAAGATTGGTACATGCCAAACAACAACAACAACATCAACAACACTGTTACTACTATCCAAAATCAACCTCCGGATTCAGATTCAGATACAAGGGACATGAACTTCTTTCACCAAGATAACAACAACAGCAACTCTTTCTTCCATCCCTCTTCTTTCCCTTCATCCATGTCCTTCATCACCAACCTTCACTACCCTCATCAGGCCACTCCAAAACCCATATTTTCTTCTCTTCTAAGTGGCATGATGATCCCTAGCAGCACCACCAATAACCCTTTGTATGATCAAAATGGTGGAAATAATAATAGTTGCCAACAGGTGATGGGGTTTCTTGAACCTCAAGCTTTCGCTACCTCTTCATCAAACGTAGATGCTACTCTCTTGGGGGGTTTAGGATTTCCAACAAGTTTGAACAACTCATCATCAGACCCCAATAATAATAGCTTATCAGCAACCATGAGCTGTGTAATCCCACAAGAACATGAAGAAGAAGATAAACCGCCCAATAATAAGTTTGGCCTCTTTGAGGGTTTTCACAATAACATTGAGAATAATACTGGTAGTAGTTCATCATCATGGATGATGAACAACAAGTACTCCAACATACTCATGAGACCTCTTGAATCTTTACCTCCATCATCAGGTGCACAACCAACACTCTTTCAGAAGAGAGCAGCACAACACAGGAAAATCAACGTCACAGATGAAAGAGGAAAGGGCAAACTTGATGAGGAGGAACAACAAGGGAATAATAATAATGAAGAAGAGAAAAGGAAGCTGGAGATGGAAGATACTGGAGATGGAAGTTTGTTAAACAGCTATGATGATTATTCTGATCATGACATGGTTGAGGATAGTATTGACAACAACAACAACATGATGAAGATGGAATCAGAGAGTAGTAGTAAAAACAAGAATATTATTGGTGAAAACAACAACAGAAACAGTAACAATAATCTCAATTTGCAGAAAGGGAATAATAACAAGAAGAAGACAGGGATGCCTGCTAAGAACTTGATGGCTGAACGCCGCAGAAGGAAGAAGCTCAATGACAGACTCTACATGCTCAGATCCGTTGTTCCTAATATCAGCAAAATGGACAGGGCTTCAATACTTGGGGATGCAATTGAATATATGAAAGAACTTCTGCAAAAGATTAATGACCTTCATAACGAATTGCAATCAATGCCTCCTACGGCACCTGCTTCAAGCTTGCATCATCCTTTGACACCAACTAATAATAATACTGCTACTCTACCGCCAGCAGCTTCTTCTCTTCCCAGCCGCATGATGATGAAGGAAACTGCTTCTTGCCCCACTTCTTCATTGCCAACTCCCAATGACCAGCCTGCCAGGGTTGAGGTTGGGTTGCGTGAAGGAAGAGGAGTAAATATCCATATGTTTTGTGATCAGAAACCTGGTCTGTTGCTCTCAACACTCACCACTTTGGACAACCTTGGGTTAGATATCCAGCAGGCTGTTATCAGTTTCTTCAATGGCTTTGCTATGGACATTTTTCGAGCTGAGCAATGCAATGAAGGTCAGGATCTCCACCCAGATCAAATCAAAGCAGCACTCATTGAAGCATCTGAAGCATCCGGCTTCCATAACATCATTTAG 1728 0.4161 MSSTNSTCLMEERELSDANNTYQLVPIPIMPPPQVVNEDWYMPNNNNNINNTVTTIQNQPPDSDSDTRDMNFFHQDNNNSNSFFHPSSFPSSMSFITNLHYPHQATPKPIFSSLLSGMMIPSSTTNNPLYDQNGGNNNSCQQVMGFLEPQAFATSSSNVDATLLGGLGFPTSLNNSSSDPNNNSLSATMSCVIPQEHEEEDKPPNNKFGLFEGFHNNIENNTGSSSSSWMMNNKYSNILMRPLESLPPSSGAQPTLFQKRAAQHRKINVTDERGKGKLDEEEQQGNNNNEEEKRKLEMEDTGDGSLLNSYDDYSDHDMVEDSIDNNNNMMKMESESSSKNKNIIGENNNRNSNNNLNLQKGNNNKKKTGMPAKNLMAERRRRKKLNDRLYMLRSVVPNISKMDRASILGDAIEYMKELLQKINDLHNELQSMPPTAPASSLHHPLTPTNNNTATLPPAASSLPSRMMMKETASCPTSSLPTPNDQPARVEVGLREGRGVNIHMFCDQKPGLLLSTLTTLDNLGLDIQQAVISFFNGFAMDIFRAEQCNEGQDLHPDQIKAALIEASEASGFHNII* 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g2631 575 CDD bHLH_AtAMS_like 372 436 - -
Amo03g2631 575 Gene3D - 360 433 IPR036638 GO:0046983
Amo03g2631 575 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 136 569 - -
Amo03g2631 575 MobiDBLite consensus disorder prediction 258 309 - -
Amo03g2631 575 MobiDBLite consensus disorder prediction 429 459 - -
Amo03g2631 575 MobiDBLite consensus disorder prediction 264 301 - -
Amo03g2631 575 MobiDBLite consensus disorder prediction 429 460 - -
Amo03g2631 575 MobiDBLite consensus disorder prediction 332 369 - -
Amo03g2631 575 PANTHER BHLH TRANSCRIPTIONAL FACTOR 136 569 - -
Amo03g2631 575 Pfam Helix-loop-helix DNA-binding domain 376 418 IPR011598 GO:0046983
Amo03g2631 575 SMART finulus 375 424 IPR011598 GO:0046983
Amo03g2631 575 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 372 441 IPR036638 GO:0046983
Amo03g2631 575 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 369 418 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g2631 Amo-Chr3 114288639 114293119 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g2631 159 545 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 46.410 2.89e-78 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo03g2631 HLH 1.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g2631 - - ahf:112732910 968.763
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo03g2631 03 114288639 114293119 Amo08g2387 08 37470865 37476056 PCT
Amo08g2387 08 37470865 37476056 Amo03g2631 03 114288639 114293119 PCT