Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g2604 CAACTCTTTCAACTTCATAATAGTAATCAGCAGGAAACATCTTCTTTGGATACTAGCTCTGTTGATCAAAGCTCCAAGGTTGTTGCTGCTACCACCAAAAGTTACAACAGTAGTGCTGATCCTTCTCCTCCTTTTCTCTCACATAACCACAGCCCTGAGTCCTCTGTGGTTGAAAACGGTGACCAAGTCACTCAGAACACTCCTCCTCCTATTAACATGGCGGACAACAAGCGGAAAACTACCTCTAACTCCTCTTCCTTCAACAACAATAAGGAGTTGTCAGCAGGTAGAGAAGGGAGAAGTAGCAAGAAACAAAGGAAGAGTAATAATGGTGGGAGTGGGGTGAAGAAGGGAGAGGAGAAGGAAAAAGAAGAGGCTCCAACAGCAACAGGGTATATCCACGTTAGAGCAAGAAGGGGCCAAGCAACTGATAGCCACAGCCTTGCTGAAAGGGTGAGAAGGGAGAAGATAAGTGAGAGGATGAAGATGTTGCAACGACTTGTGCCAGGCTGTGATAAGGTAACCGGAAAGGCCCTTGTGTTGGACGAGATCATCAATTATGTTCAGTCCCTACAAAATCAAGTAGAGTTCTTGTCAATGAAGCTTGCTTCAGTCAGCCCCTTCTTCTTTGACTTTGCAATGGACCTAGATAATGATAACAATAATGGCCACTTGGTTAGACCACTGGATCAGAGGTCATCAAATGTCTTCTCTGAGTATACCGGTGGTCAATTCTGGGAAGTAGAAGAAGACCAACGACAAAAGCAGCTTCTTCATCCATATGGACTTGGCAGCAACTTAGGTAGAGGTAAATTATCATTGGTCAGCACAATGAGTGAACCAGAATCGTGA 852 0.446 QLFQLHNSNQQETSSLDTSSVDQSSKVVAATTKSYNSSADPSPPFLSHNHSPESSVVENGDQVTQNTPPPINMADNKRKTTSNSSSFNNNKELSAGREGRSSKKQRKSNNGGSGVKKGEEKEKEEAPTATGYIHVRARRGQATDSHSLAERVRREKISERMKMLQRLVPGCDKVTGKALVLDEIINYVQSLQNQVEFLSMKLASVSPFFFDFAMDLDNDNNNGHLVRPLDQRSSNVFSEYTGGQFWEVEEDQRQKQLLHPYGLGSNLGRGKLSLVSTMSEPES* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g2604 283 PANTHER BASIC HELIX LOOP HELIX PROTEIN BHLH8 4 218 - -
Amo03g2604 283 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 139 206 IPR036638 GO:0046983
Amo03g2604 283 SMART finulus 147 197 IPR011598 GO:0046983
Amo03g2604 283 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 230 267 IPR024097 GO:0006355
Amo03g2604 283 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 4 218 IPR024097 GO:0006355
Amo03g2604 283 MobiDBLite consensus disorder prediction 1 95 - -
Amo03g2604 283 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 141 191 IPR011598 GO:0046983
Amo03g2604 283 MobiDBLite consensus disorder prediction 1 149 - -
Amo03g2604 283 Pfam Helix-loop-helix DNA-binding domain 145 192 IPR011598 GO:0046983
Amo03g2604 283 CDD bHLH_AtBPE_like 131 216 - -
Amo03g2604 283 Gene3D - 138 206 IPR036638 GO:0046983
Amo03g2604 283 PANTHER BASIC HELIX LOOP HELIX PROTEIN BHLH8 230 267 - -
Amo03g2604 283 MobiDBLite consensus disorder prediction 113 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g2604 Amo-Chr3 113401598 113403686 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g2604 88 217 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 69.231 1.07e-53 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo03g2604 HLH 7.7e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g2604 - - ahf:112732895 391.734