Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g2597 ATGGAAAAGCTAAATTTTGTGAAGAAGAACGGGGTAAGTAGAATGCCTCCTGGATTCAGATTCCAGCCAACGGATGAAGAGCTTGTGTTTCAGTATTTGAAATGTAAGGTCTTCTCATTCCCCTTGCCCGCTTCCATGATTCCTGACATCAATCTCTCCAACTATGATCCTTGGGATTTGCCAGGAAATTGTGATGAACATCAAGAGATGTATTTCTTCAGCAGCAAGGAACCCAAGTATAGAAATGGAAGCCGCATGAACCGAACAACCACCACTGGCTATTGGAAGGCAACAGGATCCGACAAAAGAATCATTTCATCTTCTAATAATAGTGACGATAATAGCATTCTTGGCATTAGAAAAACCCTAGTGTTTTACCAAGGGAAATCTCCCAATGGCACTAGAACTCACTGGGTCTTGCATGAATATCGCCTGGCTAGTACTACTCTACATGCTAATAACAATGCTTGCGATATAGGAGATTGGGTTCTGTGCCGCTTATCGGTGAAGAAAAGGAGTGTTGGGAGTGGTAGTATCATCATAAGCAAGAAAGCACGTTCTTCAGCATCTTCATCCTCATCTTCTTCCACTTCAAGTAATAACGTCATGGAAGTATCTTCTTCATATGCTTCTTAA 636 0.4167 MEKLNFVKKNGVSRMPPGFRFQPTDEELVFQYLKCKVFSFPLPASMIPDINLSNYDPWDLPGNCDEHQEMYFFSSKEPKYRNGSRMNRTTTTGYWKATGSDKRIISSSNNSDDNSILGIRKTLVFYQGKSPNGTRTHWVLHEYRLASTTLHANNNACDIGDWVLCRLSVKKRSVGSGSIIISKKARSSASSSSSSSTSSNNVMEVSSSYAS* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g2597 211 Gene3D NAC domain 24 175 IPR036093 GO:0003677|GO:0006355
Amo03g2597 211 MobiDBLite consensus disorder prediction 182 211 - -
Amo03g2597 211 SUPERFAMILY NAC domain 12 170 IPR036093 GO:0003677|GO:0006355
Amo03g2597 211 ProSiteProfiles NAC domain profile. 15 170 IPR003441 GO:0003677|GO:0006355
Amo03g2597 211 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 7 182 - -
Amo03g2597 211 Pfam No apical meristem (NAM) protein 16 145 IPR003441 GO:0003677|GO:0006355
Amo03g2597 211 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 7 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g2597 Amo-Chr3 112672895 112674098 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g2597 1 173 NAC Transcription Factor Family AT5G13180 56.069 3.98e-64 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Amo03g2597 NAM 1.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g2597 - - adu:107480040 371.318
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3572 13 121359613 121360579 Amo03g2597 03 112672895 112674098 hybridization