Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g2595 ATGGGTCACCATTCGTGCTGCAACCAACAGAAGGTTAAGAGAGGCCTTTGGTCCCCTGAGGAAGACGAGAAACTCATTCGTTACATTACCACTCATGGCTATGGCTGTTGGAGTGAAGTCCCTGAGAAAGCTGGGCTTCAAAGGTGTGGAAAGAGTTGTAGGCTGAGATGGATTAATTATTTGAGGCCTGATATTAGAAGAGGCAGGTTTACACCAGAGGAGGAGAAGTTAATCATAAGTCTCCATGGTGTCGTAGGCAATAGATGGGCGCACATTGCAAGCCACTTGCCTGGTAGAACTGACAATGAAATAAAGAACTATGGAATTCGTGGATCAAGAAGAAGATAA 348 0.4511 MGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHGVVGNRWAHIASHLPGRTDNEIKNYGIRGSRRR* 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g2595 115 PANTHER MYB TRANSCRIPTION FACTOR 1 107 - -
Amo03g2595 115 Pfam Myb-like DNA-binding domain 67 107 IPR001005 -
Amo03g2595 115 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Amo03g2595 115 CDD SANT 17 61 IPR001005 -
Amo03g2595 115 PANTHER MYB DOMAIN PROTEIN 55 1 107 - -
Amo03g2595 115 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 115 IPR017930 -
Amo03g2595 115 SUPERFAMILY Homeodomain-like 11 107 IPR009057 -
Amo03g2595 115 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Amo03g2595 115 Gene3D - 69 107 - -
Amo03g2595 115 SMART sant 66 114 IPR001005 -
Amo03g2595 115 SMART sant 13 63 IPR001005 -
Amo03g2595 115 CDD SANT 69 107 IPR001005 -
Amo03g2595 115 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Amo03g2595 115 ProSiteProfiles Myb-like domain profile. 62 107 IPR001005 -
Amo03g2595 115 Gene3D - 5 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g2595 Amo-Chr3 112495217 112496001 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g2595 1 107 MYB Transcription Factor Family AT1G63910 99.065 7.23e-81 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo03g2595 Myb_DNA-binding 7.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g2595 K09422 - tcc:18606585 237.654