Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g2568 ATGGTTTCTAGAGAGCAAAAGAGAGCAGCACTATTGCACGAGAAGCTGCAACTTCTTCGTTCCATTACTAACTCTCATGCTCTTAACAAGACGTCGATTATAATCGATGCATCAAAGTACATCAGAGATCTAAAGCAAAAAGTAGAAAGACTCAATCAAGACATGGCGGCTGCACAAACATCCACTCACCAAAATCCTTTGCCTATGGTAAAAGTAGAAACCCTAGAGAAGGGGTTTCTTGTAAACGTGGTGTCAGCAAAGAGTTGTCCAGGTCTTCTTGTTTCCATATTGGAGGTGTTTGAAGAGATGGGTCTCACTGTTATGGAAGCTAGGGTTTCTTGCACAGACACTTTTCGCTTTCAAGCTGTTGGAGGAGAAAATGAAGAGGATGGTGAGAGTATTATTGATGCACAAGCTGTGAAACTAGCAGTGGGGCAAGCAATCAAGAATTGGAGCCAACAAAGTACTGATGATGATGATGATCATGATGATGATCAACAGTGA 504 0.4187 MVSREQKRAALLHEKLQLLRSITNSHALNKTSIIIDASKYIRDLKQKVERLNQDMAAAQTSTHQNPLPMVKVETLEKGFLVNVVSAKSCPGLLVSILEVFEEMGLTVMEARVSCTDTFRFQAVGGENEEDGESIIDAQAVKLAVGQAIKNWSQQSTDDDDDHDDDQQ* 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g2568 167 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 2 157 - -
Amo03g2568 167 Gene3D - 2 67 IPR036638 GO:0046983
Amo03g2568 167 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 3 66 IPR036638 GO:0046983
Amo03g2568 167 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 2 157 - -
Amo03g2568 167 Coils Coil 34 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g2568 Amo-Chr3 111244490 111247205 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g2568 5 122 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 29.231 1.35e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g2568 - - tcc:18600910 239.58