Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g2548 ATGGACAATAATCACCAAATTTTGTTCCCTAGCTCATCATCATCTGATTTTAAGGTTTCTAGTAGCAACAGTTTTCTTGATGTTAAGAAAGGAGATATTCTAAGAACTCCAAATAAAGAATCATCAAGCAAGAAAGGTGGGAAAGAGACGAAGAAGCAGCACAGATATGTTTTTCAAACAAGGAGTCATGTTGATATACTTGATGATGGCTACCGCTGGAGAAAATACGGGGAAAAGTCTGTCAAAAACAATAAATTCCCTAGGAGTTACTATAGGTGCTCATACAGAGGGTGCAATGTGAAGAAACAAATCCAACGGCATTCCATGGACGAGCAAATCGTGATCACAACCTATGAAGGGGTCCATATTCACCCTGTCGAGAAATCTACTGAAAGCTTCGAGCAGATCTTGAGAAACTTCCAATACACAACTAAGTCCAACCCTATTATGTATCTCCAACAACCTAATTAG 471 0.3885 MDNNHQILFPSSSSSDFKVSSSNSFLDVKKGDILRTPNKESSSKKGGKETKKQHRYVFQTRSHVDILDDGYRWRKYGEKSVKNNKFPRSYYRCSYRGCNVKKQIQRHSMDEQIVITTYEGVHIHPVEKSTESFEQILRNFQYTTKSNPIMYLQQPN* 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g2548 156 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 4 143 IPR044810 GO:0003700
Amo03g2548 156 MobiDBLite consensus disorder prediction 32 54 - -
Amo03g2548 156 MobiDBLite consensus disorder prediction 1 20 - -
Amo03g2548 156 SMART WRKY_cls 67 126 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo03g2548 156 SUPERFAMILY WRKY DNA-binding domain 59 126 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo03g2548 156 Pfam WRKY DNA -binding domain 68 124 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo03g2548 156 ProSiteProfiles WRKY domain profile. 62 127 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo03g2548 156 MobiDBLite consensus disorder prediction 30 54 - -
Amo03g2548 156 PANTHER WRKY FAMILY TRANSCRIPTION FACTOR 4 143 - -
Amo03g2548 156 Gene3D WRKY domain 54 120 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g2548 Amo-Chr3 111036135 111036852 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g2548 55 141 WRKY Transcription Factor Family AT5G13080 75.862 5.88e-49 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Amo03g2548 WRKY 5.7e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g2548 - - gmx:100127378 202.986