Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g2523 ATGGCGGAACAGACGGAGAAGGCTTTCTTGAAGCAACCCAAGGTTTTCCTCTGCTCGAAGAAATCAGGGAAAGGGAAGAGGCCTGGAAAAGGAGGCAACAGGTTCTGGAAAAGCATTGGTTTAGGTTTTAAGACTCCCAGAGAGGCTATTCAAGGGACTTACATTGACAAGAAATGCCCATTCACTGGCACTGTGTCCATCCGAGGTCGCATTCTTGCAGGTACTTGCCACAGTGCCAAGATGACCAGGACTATCATCGTTCGTCGCAACTATCTTCATTTCATTAAGAAATACCAAAGGTACGAGAAGAGGCACTCAAATATCGCAGCACATATATCTCCATGCTTCCGTGTGAAGGAAGGAGATCATGTTATCATAGGGCAATGCAGGCCATTGTCAAAGACAGTGAGGTTTAACGTGTTGAAAGTGATTCCTGCTGGATCGTCCTCTGGAGTTGCTAAGAAAGCCTTCACAGGAATGTGA 483 0.4638 MAEQTEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAIQGTYIDKKCPFTGTVSIRGRILAGTCHSAKMTRTIIVRRNYLHFIKKYQRYEKRHSNIAAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSGVAKKAFTGM* 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g2523 160 ProSitePatterns Ribosomal protein S17 signature. 121 133 IPR019979 GO:0003735|GO:0005840|GO:0006412
Amo03g2523 160 PANTHER 40S RIBOSOMAL PROTEIN S11-1-RELATED 1 160 - -
Amo03g2523 160 PANTHER 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER 1 160 IPR000266 GO:0003735|GO:0005840|GO:0006412
Amo03g2523 160 SUPERFAMILY Nucleic acid-binding proteins 68 147 IPR012340 -
Amo03g2523 160 Pfam Ribosomal_S17 N-terminal 4 72 IPR032440 -
Amo03g2523 160 Pfam Ribosomal protein S17 74 142 IPR000266 GO:0003735|GO:0005840|GO:0006412
Amo03g2523 160 Gene3D - 1 158 - -
Amo03g2523 160 PRINTS Ribosomal protein S17 family signature 88 111 IPR000266 GO:0003735|GO:0005840|GO:0006412
Amo03g2523 160 PRINTS Ribosomal protein S17 family signature 121 131 IPR000266 GO:0003735|GO:0005840|GO:0006412
Amo03g2523 160 PRINTS Ribosomal protein S17 family signature 131 138 IPR000266 GO:0003735|GO:0005840|GO:0006412
Amo03g2523 160 TIGRFAM uS17_arch: ribosomal protein uS17 55 143 IPR028333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g2523 Amo-Chr3 110126858 110128610 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g2523 1 160 Cytoplasmic Ribosomal Protein Gene Family AT3G48930 91.250 1.00e-97 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g2523 K02949 - gmx:100500186 302.367