Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g2489 ATGTTGACGGAGAACTTCAAAGAACAGCTTGCTTTGTCTGTTAGAAGCATCCAGTGGAGCTATGCAATATTCTGGTCTACTTCATCTACCCAACCCGGCAGGGTGTTGAGTTGGGGGGAAGGATATTACAATGGAGACATTAAGACAAGGAAGACAAGTCAAGGAGTGGAACTCAATTCTGATCAGATAGGGTTGCAGCGGAGTGAGCAGCTTCGAGAGTTATACAAGTCCCTCAAAACTGTAGAAGCCAGCCCTCAAACCAAAAGGCCTTCAGCAGCACTGTCTCCGGAGGATCTCACAGATACAGAATGGTACTATTTGGTTTGCATGTCCTTTGTATTCAACATTGGCCAAGGGTTACCAGGAAAGGCTCTTGCAAAAGGTGAACCAATTTGGCTGTGTGATGCTCCTTCTAGTGATTGTAGAGATTTTAGTCGCTGTCTTCTGGCTAAGAGTGCATCCATTCAGACAGTGGTGTGCTTTCCTTTTATGGATGGGGTCATTGAGCTGGGTACAACTGATTATGTCTCAGAAGATCTCAGTCTCATTCAACAGATCAGAACTTCCTTGGATATTCTTGATGTCGGTGTTCATAATGTACATGGAGCATTTAATGCGAAACAATCTCAAGAAGTAGGAGGTGCATTAATCAGCATAACTTCTCCTAATAACAGTTCAAATGCATTTCAAGCCAATCAACCACCAGATGAAACATTCATGGTTGAAAGGATAAATAATGGCACCTCTCAAGTCCAAAGTTGGCAAATTATGGATGATGAATTGAGCAATGCTGTTCATAATTCTAGTGACTGCGTATCTCAAACTCTTCACAGTCCTGAGAACGTTGCTTCTCTTCCAAAGGGTGAAAACCTCACTGATAGTGCCAAAGACCTTCAAAAGTGCAATAACTCAAAAATGACATTAGTTGATCCTCGAAGCGATGATTGGCATTATCAGATGGTTCTTTCTACCCTTCTAAAAAGCTCAGACCAGTTAATCATGGGGATGCATTTTCAAAATTTTCATCAGGAATCAAGCTTTACAAGTTGGAAGAAAGCTGGGTCAGTGAGCTACCAAAGGCCAAGAACTGGAGGAAGCTCACAAGCTTTATTGAAGAAGGTATTGTTTGAAGTTCCTCGGATGCACTTGGATGGGATACTTGAGTATCAAGAAGAGAATGACTTTAAGGAAGCAGTGAGAACAGAAGCTGATGAAAATGGCATGAACCATGTTTTGTCAGAGAGAAGGAGAAGAGCAAAACTAAATGAAAGGTTTTTAACCCTTAGATCAATGGTCCCTTCAATTACTAAGGATGACAAAGTTTCGATACTAGATGATGCAATAGAATACCTTAGAAAGCTTGAAAAAAGGATAAAAGAGTTGGAAGCTCATAAGGATCTAACAGACAGAGAGGCTAGAACTAAAAGATCACCTCAAGATATGGTGGAGAGGACTTCTGATAATTATTTTAACAAAACGGATAACGGCAATAAATCGATGGCGAAAAAGAGGAAGTCTCGGGACATAGATGACACAAGGCCAGAGATTAATTCAGAATCTTTACTAAAAGGAAGTTCTACTAATGATGTTGCTGTTAACATCAATGAGAATAATGAAGTTGTGATTGAAATGAAATGCCCTTCAAGAGCAGGAATGTTTCTAAAAATTATGGAAGCAGTTAGCAGTCTCAGATTGAATTTTCATTCAGTTCAGTCCAGCGAAGTTGATGGGAATCTTTATTTTACCCTTAAATCTAAGCTCACAGGGCCAACTATTGTATCAGCAAAAAGGATCAAACAAACACTACAAAATGTGGCTTTCAAGTGTTGA 1830 0.4011 MLTENFKEQLALSVRSIQWSYAIFWSTSSTQPGRVLSWGEGYYNGDIKTRKTSQGVELNSDQIGLQRSEQLRELYKSLKTVEASPQTKRPSAALSPEDLTDTEWYYLVCMSFVFNIGQGLPGKALAKGEPIWLCDAPSSDCRDFSRCLLAKSASIQTVVCFPFMDGVIELGTTDYVSEDLSLIQQIRTSLDILDVGVHNVHGAFNAKQSQEVGGALISITSPNNSSNAFQANQPPDETFMVERINNGTSQVQSWQIMDDELSNAVHNSSDCVSQTLHSPENVASLPKGENLTDSAKDLQKCNNSKMTLVDPRSDDWHYQMVLSTLLKSSDQLIMGMHFQNFHQESSFTSWKKAGSVSYQRPRTGGSSQALLKKVLFEVPRMHLDGILEYQEENDFKEAVRTEADENGMNHVLSERRRRAKLNERFLTLRSMVPSITKDDKVSILDDAIEYLRKLEKRIKELEAHKDLTDREARTKRSPQDMVERTSDNYFNKTDNGNKSMAKKRKSRDIDDTRPEINSESLLKGSSTNDVAVNINENNEVVIEMKCPSRAGMFLKIMEAVSSLRLNFHSVQSSEVDGNLYFTLKSKLTGPTIVSAKRIKQTLQNVAFKC* 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g2489 609 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 7 188 IPR025610 -
Amo03g2489 609 MobiDBLite consensus disorder prediction 497 517 - -
Amo03g2489 609 Coils Coil 444 471 - -
Amo03g2489 609 Gene3D - 102 173 IPR029016 -
Amo03g2489 609 PANTHER TRANSCRIPTION FACTOR EGL1 5 605 - -
Amo03g2489 609 PANTHER TRANSCRIPTION FACTOR TT8 5 605 - -
Amo03g2489 609 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 408 471 IPR036638 GO:0046983
Amo03g2489 609 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 405 454 IPR011598 GO:0046983
Amo03g2489 609 SMART finulus 411 460 IPR011598 GO:0046983
Amo03g2489 609 Pfam Helix-loop-helix DNA-binding domain 409 455 IPR011598 GO:0046983
Amo03g2489 609 Gene3D - 397 472 IPR036638 GO:0046983
Amo03g2489 609 MobiDBLite consensus disorder prediction 469 522 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g2489 Amo-Chr3 107770139 107773755 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g2489 2 609 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G41315 47.005 1.41e-178 518
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo03g2489 bHLH-MYC_N 2e-51 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g2489 - - ahf:112732736 1173.3