Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g2458 ATGGATGGGAGAGAAGCCATGACATTTACTAGTGGGTCTTCTCCATTTTACGTGCATAGAGAGAGTGGAGGGTTCCAAGGATCTCCAGGATTCAGAGCTTTGTCAAACACTGCCGTTCAATCTCAGTCAAATGCAAAGGGTGGCGGAGGCGGCTCTGTTGGTTCTAATTCCTCATTTGCATTACYGGTTCAACCTCAAGCACAGGCTCGTGCCGGTTTTAGTCATGGCATTGGCATTGGTGCCTCATCTTCTGGTGGTGGAGTGCCTCCTTCTTCCTCAGGTGAGCCTGTGAAGAAGAAGAGAGGGAGACCCCGCAAGTATGGCCCYGAAGGACCAGGACCAGTTTCTTTGAGACTTTCATCAATGTCTGCCCCCGCTTGTTGGAATGCTGGTTCAACCTCTGATTCCCAGAAAAGGGGTAGAGGACGCCCTCCGGGATCTGGAAGGAAACAACAGCTGGCTACTCTTGGTGAATGGATGAATAGTTCTGCAGGGCTGGCTTTTTCACCTCATGTAATCTCCATTGGAGTAGGGGAGGACATTGTAGCAAAGCTATTGTCGATATCACAGCAGAGACCACGGGCWCTCTGCATCATGTCGGGTACTGGGATAGTTTCTCTAGTTACTCTCAGGCAGCCTGCTTCTACTAACAKCAGTGTCACGATTGAGGGCCGATTCCAAATATTGTGTTTATCTGGTTCTTACTTGGTTGCTGAAGATGGTGGACCGTCCAATAGAACAGGTGGCATAAGTGTTTCCCTTTCTAGCTCCGACGGCCGTGTTATTGGTGGTGGTGTTGCAGTGCTTATTGCTGGAAGCCCAGTGCAGGTGGTAGTATGCAGTTTTGTATATAGTGGTAGCTCTAAGACCAAGCCCACGCAAGCTACCCTCATGAAAGAAGAGAGTTCCGAGCCTCAGCGCAATGACAAGTTAGCTTCTTTGGCCAGTGCTCCGCATAGTCAAAACTACATCCCTTCTGCTACAGGCATTTGGCCTGGATCACGACCTGCTGATCTCAAGAGCGTGCACGGACACACTGGCATTGACTTGACACGTGGTTGA 1062 0.4991 MDGREAMTFTSGSSPFYVHRESGGFQGSPGFRALSNTAVQSQSNAKGGGGGSVGSNSSFALXVQPQAQARAGFSHGIGIGASSSGGGVPPSSSGEPVKKKRGRPRKYGPEGPGPVSLRLSSMSAPACWNAGSTSDSQKRGRGRPPGSGRKQQLATLGEWMNSSAGLAFSPHVISIGVGEDIVAKLLSISQQRPRALCIMSGTGIVSLVTLRQPASTNXSVTIEGRFQILCLSGSYLVAEDGGPSNRTGGISVSLSSSDGRVIGGGVAVLIAGSPVQVVVCSFVYSGSSKTKPTQATLMKEESSEPQRNDKLASLASAPHSQNYIPSATGIWPGSRPADLKSVHGHTGIDLTRG* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g2458 353 MobiDBLite consensus disorder prediction 1 152 - -
Amo03g2458 353 SUPERFAMILY AF0104/ALDC/Ptd012-like 167 284 - -
Amo03g2458 353 MobiDBLite consensus disorder prediction 334 353 - -
Amo03g2458 353 CDD DUF296 170 282 IPR005175 -
Amo03g2458 353 Pfam Plants and Prokaryotes Conserved (PCC) domain 170 283 IPR005175 -
Amo03g2458 353 ProSiteProfiles PPC domain profile profile. 162 303 IPR005175 -
Amo03g2458 353 MobiDBLite consensus disorder prediction 29 64 - -
Amo03g2458 353 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 15 353 - -
Amo03g2458 353 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 15 353 IPR039605 GO:0003680
Amo03g2458 353 MobiDBLite consensus disorder prediction 122 140 - -
Amo03g2458 353 Gene3D - 170 301 - -
Amo03g2458 353 SMART AT_hook_2 138 150 IPR017956 GO:0003677
Amo03g2458 353 SMART AT_hook_2 98 110 IPR017956 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g2458 Amo-Chr3 106092197 106094886 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g2458 1 353 AT-hook Motif Nuclear Localized (AHL) Family AT1G63470 46.310 3.32e-85 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g2458 - - gmx:100798706 434.876