Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g2431 ATGGTTTCATCATCAAGTGGTGGATTCTGCTACACCTACAGCGATAATCCTGGAGGAGGAGGAGGAAGCGGCTTTGTATCTGATTCGGAGATGGAGATGAAGTGGAAAACCTTGTTCGCCAACAACGAACCACCACCTCCTACTTGTTTTGATCTAATACTCCAAAACACGCCAAGCCAAGGCCTTTCACTATCTCTTAGCTCAAACAACCCTTCTTCTATTTCTCTCCAATCTTTTCCCCTAAGACAACAACATCATGAGATGGCGCTGCAAGGCCATTACTCGCTCAAGGCCTCCAGGTTCTTGCTACCGGCACAGCAACTCCTCAACGAGTTCTGTAGCCTAGGAACCAAGCAACTCAATAATCAACTCATCAAGCGTAACAAGAACAACACCAACCCCCCACCTCTTACCTCTCTAGACTTGGTTGAATTGCACAAGAGAAAGGCTAAGCTCCTTGTCATGCTCCAAGAGGTGGATACAAGATACGAGCACTACTGTAATCAGATGAAGGGAGTGGTGGCGTCATTTGAGGCCATGGCGGGGGAGGGAGCGGCCACCGTGTACTCGGCACTTGCGCTCAAGGCCATGTCACGCCACTTCAGATGCTTGAAGGATGGGATACTGGAACAGATAGAGGCCACTCGGAAGGGGATGGGAGAGAAGGATCCAATTGCACCGGGCACCACTAAGGGCCAAACCCCCAGGCTTAGAATCATTGACCAGGCTTTGAGACAGCAAAGGGCTTTTCACCAAACCATCTCCATGGAATCTCATCCCTGGAGACCCCAACGTGGCCTTCCTGAACGTTCCGTTTCTCTTCTCCGCGCTTGGCTTTTCGAGCATTTTCTTCACCCGTACCCAAGTGATGTTGATAAACATATTTTAGCACGCCAAACTGGTCTCTCTAGAAGCCAGGTTTCAAATTGGTTTATCAATGCAAGGGTGAGGCTATGGAAGCCAATGGTGGAGGAAATGTACTTGGAAGAAGAGAAGGAGGCTGCTGCAGCATCCTCGGAGGGAGGAGGAGGCAGCAACACTGAAGATTTTCAAAACCTATCTCCAAATTCAGCAGCAAGACCAGAGGATCAGAAGCCTCGCCTACTTCGAATCGATTCGGAATGCATGTCCTCAATCATCAACAACTCTGATCATCGCAAAGATAACCATCAGCAGATGAATCAACAAGAGGAGGAACAGTACTTAGGGCGAGGTGTCGCAGACACGTTTGGATCAGTGGAGATTGATTTCTCATCATATCCTCAGGGCTTCAATAACAGTGGAGGAGGTGCGGTTTCTTTGACGCTAGGGTTACAGCAACACGGTGGAAACGGGGTGAGCTTGGCTTTCCCGCCAGAAACTCATCATCAGCATCAGGCCTCCATGTTCTACTCATCAAGGGACCAGATTATTGAAGACTGTAGTCAACCAGTTCAGTACTCTCTTTTGGATGGCGAAGCACACGCCATGCCCTACAGGAATTTGATGGGGACCCAGTTGCTTCATGACTTGGCCGGATAG 1521 0.4931 MVSSSSGGFCYTYSDNPGGGGGSGFVSDSEMEMKWKTLFANNEPPPPTCFDLILQNTPSQGLSLSLSSNNPSSISLQSFPLRQQHHEMALQGHYSLKASRFLLPAQQLLNEFCSLGTKQLNNQLIKRNKNNTNPPPLTSLDLVELHKRKAKLLVMLQEVDTRYEHYCNQMKGVVASFEAMAGEGAATVYSALALKAMSRHFRCLKDGILEQIEATRKGMGEKDPIAPGTTKGQTPRLRIIDQALRQQRAFHQTISMESHPWRPQRGLPERSVSLLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEEMYLEEEKEAAAASSEGGGGSNTEDFQNLSPNSAARPEDQKPRLLRIDSECMSSIINNSDHRKDNHQQMNQQEEEQYLGRGVADTFGSVEIDFSSYPQGFNNSGGGAVSLTLGLQQHGGNGVSLAFPPETHHQHQASMFYSSRDQIIEDCSQPVQYSLLDGEAHAMPYRNLMGTQLLHDLAG* 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g2431 506 CDD homeodomain 261 322 IPR001356 GO:0003677
Amo03g2431 506 Pfam Homeobox KN domain 278 317 IPR008422 GO:0003677|GO:0006355
Amo03g2431 506 ProSiteProfiles 'Homeobox' domain profile. 258 321 IPR001356 GO:0003677
Amo03g2431 506 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 42 456 - -
Amo03g2431 506 Gene3D - 264 326 - -
Amo03g2431 506 MobiDBLite consensus disorder prediction 331 367 - -
Amo03g2431 506 PANTHER HOMEOBOX PROTEIN BEL1 HOMOLOG 42 456 - -
Amo03g2431 506 Pfam Associated with HOX 96 208 IPR006563 -
Amo03g2431 506 SMART HOX_1 261 325 IPR001356 GO:0003677
Amo03g2431 506 MobiDBLite consensus disorder prediction 340 359 - -
Amo03g2431 506 SUPERFAMILY Homeodomain-like 262 327 IPR009057 -
Amo03g2431 506 SMART prehox3 90 210 IPR006563 -
Amo03g2431 506 Coils Coil 380 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g2431 Amo-Chr3 104398959 104401950 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g2431 40 505 Homeobox Transcription Factor Family AT5G41410 43.400 6.79e-119 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Amo03g2431 POX 7.9e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g2431 - - adu:107479887 954.51