Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g2428 ATGATTTCCACCGAGGAATCATGGACTACTTGGCTCTGTGATTTGGTAATTAAACAAACAAACAACACATTTTCATCTTGCAAATTAAATGAATCCCTGATGACTTTGTTCTTCTTTTGCTCTGATCTGCAGGAAGAAGAGGACTACAGTTTCATCAATGGCATAATAGCAGCCCCTAATAATTACTCAAACTCACAGTCACAGATGAGTAACAATGATAATGAGAGGCCATCCAAGCTTCCCAAGAGCACCACCCCAACCCCAAGACGCAGAAGAACTGGCTCAGCTGGCACTGGCAGATCCCCCCAACACGCCCATGATCACATCATTGCCGAAAGAATGAGAAGGGAAAAGATTAGCCAACAGTTCATAGCACTTTCTGCCCTTATTCCAGGCCTAAAAAAGATGGACAAGGCGACGGTGTTAGGCGACGCTATCAAGTACGTGAAGCAGCTACAAGAGCAAGTGAAGGTTCTAGAAACTGAAAGCAAAAGGAAAAGCGCGGAGTCTGTTGTGTATGTTGAGAAATCTGAGGTGTGCGGAGAGGAAGATGTGTCTGTGTCAGACACTTGGTCAAATTCAGGGGGGGATGGAAACTCATCGTACGAAGTGTCAAAAGCAGTGAGTAGGTCGGTGCTGCCTGAAGTGGAGGCAAGAGTGTCTGAGAAGAACGTCCTCATCCGGATCCACTGCGAGAAACACAAAGGAGTGTTGATGCACATTCTCAAGCTCATTGACAAACTCCATCTCTCTATGGATGACAAGTTCAGCTTAAGCGCGAAGGAGCTTGCTAGAAACATAAGGGTGGGAGTGTTGCAATCGATGTAG 828 0.4589 MISTEESWTTWLCDLVIKQTNNTFSSCKLNESLMTLFFFCSDLQEEEDYSFINGIIAAPNNYSNSQSQMSNNDNERPSKLPKSTTPTPRRRRTGSAGTGRSPQHAHDHIIAERMRREKISQQFIALSALIPGLKKMDKATVLGDAIKYVKQLQEQVKVLETESKRKSAESVVYVEKSEVCGEEDVSVSDTWSNSGGDGNSSYEVSKAVSRSVLPEVEARVSEKNVLIRIHCEKHKGVLMHILKLIDKLHLSMDDKFSLSAKELARNIRVGVLQSM* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g2428 275 Gene3D - 102 172 IPR036638 GO:0046983
Amo03g2428 275 SMART finulus 109 158 IPR011598 GO:0046983
Amo03g2428 275 MobiDBLite consensus disorder prediction 63 100 - -
Amo03g2428 275 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 87 251 - -
Amo03g2428 275 Coils Coil 142 169 - -
Amo03g2428 275 Pfam Helix-loop-helix DNA-binding domain 108 153 IPR011598 GO:0046983
Amo03g2428 275 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 107 169 IPR036638 GO:0046983
Amo03g2428 275 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 103 152 IPR011598 GO:0046983
Amo03g2428 275 PANTHER BHLH TRANSCRIPTION FACTOR 87 251 - -
Amo03g2428 275 MobiDBLite consensus disorder prediction 63 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g2428 Amo-Chr3 104338826 104340303 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g2428 99 250 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 49.342 4.53e-40 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo03g2428 HLH 1.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g2428 - - ahf:112748090 405.986