Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g2372 ATGAAGAGGAAAGTAGCCAAGGATCAAATAGAGAGGCGCACAAAAGCAGAATGGGCAATATGTTTATGCAATAGTAGGGCTGAAGAAGTTGAATCAAGAATAAAGGAAGAAGTGAGCGCAAGGAAAGAAATTAAGAAAGAAGTGATGGCAAACAAAGAGCAGGGCAAGATTGATGGTACTAGAAGGATATATATTTTGTTCATCAATTCATGTTTCTCTCACTGCCAATCTGAGAGGCAGGACACATGGTTCGCTAAAAATTCTCCAATCATCAAGAATAAGAGGAGAAGAGAGAGGATTAATGAGCGACTAAGAACTCTACAGAGTCTTATTCCCAATGAAACAAAGATGACCATATTATATTTATATACACAAGTTGATATAAGAACAATGCTAGAAGAAGCAGTGCATTACGTGAAATTTTTGCAGCTACAGATCAAGCTTTTGAGCTCTAATGATTTGTGGATGTATGCTCCGATAGCTTATAATAGATTTGACAAA 501 0.3673 MKRKVAKDQIERRTKAEWAICLCNSRAEEVESRIKEEVSARKEIKKEVMANKEQGKIDGTRRIYILFINSCFSHCQSERQDTWFAKNSPIIKNKRRRERINERLRTLQSLIPNETKMTILYLYTQVDIRTMLEEAVHYVKFLQLQIKLLSSNDLWMYAPIAYNRFDK 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g2372 167 Pfam Pectinacetylesterase 63 100 IPR004963 GO:0016787
Amo03g2372 167 SMART finulus 90 148 IPR011598 GO:0046983
Amo03g2372 167 Coils Coil 27 47 - -
Amo03g2372 167 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 95 163 - -
Amo03g2372 167 Pfam Helix-loop-helix DNA-binding domain 93 143 IPR011598 GO:0046983
Amo03g2372 167 Gene3D - 85 150 IPR036638 GO:0046983
Amo03g2372 167 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 84 142 IPR011598 GO:0046983
Amo03g2372 167 PANTHER TRANSCRIPTION FACTOR BHLH139-LIKE 95 163 - -
Amo03g2372 167 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 90 157 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g2372 Amo-Chr3 99965758 99967469 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g2372 94 166 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G27740 71.233 8.46e-31 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo03g2372 HLH 2.6e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g2372 - - ahf:112705103 106.301