Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g2316 ATGGCTGACACTGCTGCAGAAGTTCCCACAAGGAGGTCAAGGAGCAAAAGGGCTCTCAAGGACAAAAACTCGTCAACAAATGAGTCCGCAAACACCATCACCACCAAGGTCTCAGAATTCACACCTCCAATTTCTGAACAAGTGATAGTGAAGGAGAACCTCGACACAACCACCACCGTTTCTCAACCCAAGAAAGGAAGAGCTGCTTCAAAGAAACAAAGCACGAAGCAGCAGCAGCAGCAATCTCCTTCTTCTTTTGAGAAAGAGTTGCTTGAGATGCAGGAGAAGCTGCAGCAGCTGCACCTCGAGAAGGAGAAAACCGAGGAGCTCTTAAAAGCCAAGGATGAGGCCCTCAAGCTCAAGGACCAAGAGCTTGAAAACCGAGGCAAGGAACAGGAGAAGCTCCAGACCGAGCTCAAGAAGCTCCAGAAGTTGAAGGAGTTCAAACCCACCATGGTTTGTTTGCCATGCTTGGATCTTGATTTTTTCTTTTTTTTTTTTCACTCCTCTTTTCTTGTTTTGGCTACTATCAAGAAAACAAACTCAGAGGCAGAATTCAAGGACATCTCAAACATGTTGGGGGCTAAATGGAAGACAGTTAGCGCTGAAGAGAAGAAGCCGTACGAAGAGAAGTACAATGCTGAAAAAGAAGCATATATGGAGGTAATGGCGAAGGAAAAGCGCGAGACGGAGGCACTGAAGCTGTTGGAAGAGGATCAGAAGCAGAAGATGGCGATGGAGCTTCTTGAACAATACATGCAGTTCAGACAAGAAACAGAGAAAGAGACTACAAAGAAGAACAAGAAAGAGAAGGATCCATTGAAGCCAAAGCACCCAATGTCAGCATATATCCTTTTCACAAACGATAGGCGTGCGGCTCTTGTTGCAGAGAACAAGAGCGTTGTGGAAGTTGCCAAGATCACAGGGGAAGAGTGGAAGAACATGACGGAGGAACAGAAGAGGCCTTACGAGGAGATGGCGAAGAAGAAGAAGGAGCAGTATGTTCAAGAAATGGAAGCTTATAAGCAGAGGAAACATGAAGAGGCTGCAAATCTCATGAAGGAAGAGGAGGAGCACATGAAGCTTCAGAAGCAGGAAGCGTTGCAGCTCCTCAAGAAGAAAGAGAAAACTGAAATCCTCATCAAGAAAACAAAGCAGAAGAAGAAGCAGAACAAGGAAGATAAGAATTCTGACCCAAACAGGCCTAAGAGGCCTCCATCCTCATTCCTCTTATTCAGCAAGGAAGCAAGGAAAGCTTTACAGGAGGAACGTCCAGGAATCAACATTTCCACCCTTAATGCAGTCATTTCATTGAACGAGGAAGATAGACAAATGTGGAATGGGAAAGCAAGTGAAGCAATGGAAGTGTACAAGAAGGAATTGGAGGAATACAACAAAACCATTGCTTCAACTGAAGAATGA 1422 0.4508 MADTAAEVPTRRSRSKRALKDKNSSTNESANTITTKVSEFTPPISEQVIVKENLDTTTTVSQPKKGRAASKKQSTKQQQQQSPSSFEKELLEMQEKLQQLHLEKEKTEELLKAKDEALKLKDQELENRGKEQEKLQTELKKLQKLKEFKPTMVCLPCLDLDFFFFFFHSSFLVLATIKKTNSEAEFKDISNMLGAKWKTVSAEEKKPYEEKYNAEKEAYMEVMAKEKRETEALKLLEEDQKQKMAMELLEQYMQFRQETEKETTKKNKKEKDPLKPKHPMSAYILFTNDRRAALVAENKSVVEVAKITGEEWKNMTEEQKRPYEEMAKKKKEQYVQEMEAYKQRKHEEAANLMKEEEEHMKLQKQEALQLLKKKEKTEILIKKTKQKKKQNKEDKNSDPNRPKRPPSSFLLFSKEARKALQEERPGINISTLNAVISLNEEDRQMWNGKASEAMEVYKKELEEYNKTIASTEE* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g2316 473 Coils Coil 90 145 - -
Amo03g2316 473 MobiDBLite consensus disorder prediction 257 278 - -
Amo03g2316 473 Coils Coil 324 394 - -
Amo03g2316 473 Pfam HMG (high mobility group) box 402 465 IPR009071 -
Amo03g2316 473 Pfam HMG (high mobility group) box 276 342 IPR009071 -
Amo03g2316 473 Pfam HMG (high mobility group) box 165 224 IPR009071 -
Amo03g2316 473 MobiDBLite consensus disorder prediction 257 277 - -
Amo03g2316 473 Coils Coil 447 473 - -
Amo03g2316 473 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 156 227 IPR009071 -
Amo03g2316 473 Gene3D High mobility group box domain 381 469 IPR036910 -
Amo03g2316 473 MobiDBLite consensus disorder prediction 24 42 - -
Amo03g2316 473 Coils Coil 209 229 - -
Amo03g2316 473 MobiDBLite consensus disorder prediction 1 86 - -
Amo03g2316 473 CDD HMGB-UBF_HMG-box 276 339 - -
Amo03g2316 473 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 402 465 IPR009071 -
Amo03g2316 473 SUPERFAMILY HMG-box 396 468 IPR036910 -
Amo03g2316 473 SUPERFAMILY HMG-box 173 224 IPR036910 -
Amo03g2316 473 Gene3D High mobility group box domain 160 234 IPR036910 -
Amo03g2316 473 MobiDBLite consensus disorder prediction 9 23 - -
Amo03g2316 473 Gene3D High mobility group box domain 257 353 IPR036910 -
Amo03g2316 473 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 276 342 IPR009071 -
Amo03g2316 473 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 176 472 IPR044601 GO:0003677
Amo03g2316 473 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 7 153 IPR044601 GO:0003677
Amo03g2316 473 MobiDBLite consensus disorder prediction 379 424 - -
Amo03g2316 473 CDD HMGB-UBF_HMG-box 175 224 - -
Amo03g2316 473 SMART hmgende2 275 343 IPR009071 -
Amo03g2316 473 SMART hmgende2 401 466 IPR009071 -
Amo03g2316 473 SMART hmgende2 164 228 IPR009071 -
Amo03g2316 473 SUPERFAMILY HMG-box 264 348 IPR036910 -
Amo03g2316 473 MobiDBLite consensus disorder prediction 50 86 - -
Amo03g2316 473 CDD HMGB-UBF_HMG-box 402 462 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g2316 Amo-Chr3 96801579 96803342 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Amo03g2316 HMG_box 5.1e-18 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g2316 K09273 - gmx:100783033 424.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3306 13 105703543 105705525 Amo03g2316 03 96801579 96803342 hybridization