Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g2312 ATGGAAAATGACGGGCGCTGGGAGCAGAACATACTCATCAACGAGCTAGTTCAGGGGATGGAGGTAGCAAGAAGGTTGAAGGAAGACATGAATGCGACATATTCAGCTGACACAAAAGATTTGTTGCTGCAGAGGATATTATCGTCGTATGAAAAAGCTCTGCTAATTCTAAGATGGAATGCATCAACTTCCAAGTCTCAGAACATGAGTCAAGCAACAGCAACAGCAACCTTGTTTTCAGAGTCACCAATATCTATCAGCGCAAGTCCTCTGAGGGAGGACAATCATAATCAAGAGTTTAAACACGATTCAAAGAAAAGAAAGACAATGGCCAAATGGGTAGATCAAGTGAGAGTGAGCTTTGAGAGTGGCCTTGAAGGACCACATGAAGATGGTTACAACTGGAGAAAATATGGACAGAAAGATATCCTTGGTGCCAAATATCCCAGAAGTTATTATAGGTGCACCTTCCGGAACACTCAGGGGTGCTGGGCCACGAAGCAAGTACAGAGATCAGACGAAGATCCTACCATATTTGACATAACTTACAAAGGAAGGCATACCTGTTCTCAGGGAAACAAGGCTGTTCCGCAACCGAAATCGCCAGACAAACATGAGMAACTGCAATGTCATAGTAACGAAATTCAGCATAGACAAACATCAGAAGAAAGCCTGACAACTTTCGGGACCATTATGACAGTTAAAAGAGATATGGTGGSAAATGGAGAGATGGAATATCCTTTCACTTTCCCTTCAACTTCATTTGGAAGCATGGCACAAGAAAGCTACAGCTTGATTCCTTCARCCCTGGAGAACGAATCCTTCYTGAGCAGYCATTTCCAAACTCACTTATTATATCCAAACATGCAAGAATTTAAATACCTGCCATCTACGTCTTTCCAGATGAATGAGCTTGATGGGATCTATAATAGGCCRCTTTCAGAATCAGATATTACTGAGATCATTTCCACCAACACATCCACCACCAATTCTCCAGTTCCGGAGTTCAATTTCTCACTTGATCCAGTGGAAATTGATCCAAATTTCCCTCCCAATACCCTGGATTTTTCTCCTAGAGCCCTTAACAACAAGAACATCTAG 1101 0.4214 MENDGRWEQNILINELVQGMEVARRLKEDMNATYSADTKDLLLQRILSSYEKALLILRWNASTSKSQNMSQATATATLFSESPISISASPLREDNHNQEFKHDSKKRKTMAKWVDQVRVSFESGLEGPHEDGYNWRKYGQKDILGAKYPRSYYRCTFRNTQGCWATKQVQRSDEDPTIFDITYKGRHTCSQGNKAVPQPKSPDKHEXLQCHSNEIQHRQTSEESLTTFGTIMTVKRDMVXNGEMEYPFTFPSTSFGSMAQESYSLIPSXLENESFLSSHFQTHLLYPNMQEFKYLPSTSFQMNELDGIYNRPLSESDITEIISTNTSTTNSPVPEFNFSLDPVEIDPNFPPNTLDFSPRALNNKNI* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g2312 366 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 1 353 IPR044810 GO:0003700
Amo03g2312 366 SMART WRKY_cls 129 191 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo03g2312 366 Gene3D WRKY domain 115 192 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo03g2312 366 SUPERFAMILY WRKY DNA-binding domain 128 191 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo03g2312 366 Pfam WRKY DNA -binding domain 130 189 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo03g2312 366 ProSiteProfiles WRKY domain profile. 124 187 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo03g2312 366 PANTHER WRKY TRANSCRIPTION FACTOR 41-RELATED 1 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g2312 Amo-Chr3 96719857 96721157 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g2312 7 350 WRKY Transcription Factor Family AT4G11070 36.364 1.10e-60 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Amo03g2312 WRKY 8.8e-27 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g2312 - - adu:107480050 722.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3295 13 105378051 105381486 Amo03g2312 03 96719857 96721157 hybridization
Amo05g2380 05 51076375 51077592 Amo03g2312 03 96719857 96721157 PCT