Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g2285 ATGGCTACCGTGCCGCCATGTATATTATTCCTCTTCTTGGTGGCGCTAACAAGCATAGGCATAGCAAAGGCTCAGTTCTACTGTGAAAGCATATCATGCGGGAAGGGAGGAGTTTCAATTGAGTTCCCGTTTTACCTGAAAGAAAGTCAAATCCCTGGATGTGGCTACCCAGGGTTCGAGCTCTCATGCGCCAACACCACCACGGAGCCCTTGCTGACTCTCCCAGCTGAACCAGGTCACTTCACTGTGAAACTCATCTCCTTAGAAGACCAACAAGTTTGGATCAACGACCCTCAGGAATGCCTCCCAAAGCGTTTGATGCGTGACCGTGGCCTCAATCTCCAACGCTCACCCTTCCAATTAAGCTCTGCTTACTCGCATGTCAACTACACCTTCCTCAGATGCCCTTCAAATTTAACCGCTTTGTCTATGGTACAACCAATACCCTGTTTGAACTCAGGGTTTAATAGTAGTAGCAAATCTTCGGTGGTGGCGATCTTGTCGAATCCGCCGTTTCCAACGCCGTGGACGTCGCCGTGCCACGTCATATCGTGGGCTATGATCCCGGTTGCCGGTTTTCCGTGGCTGTTTTGGACGGATTACTATTCTGACATAAAGTTGGAATGGGATAACCCAAATTGCGGAAGTTGCGAGGCACGTGGAGGACGGTGTGGGTTCGTTGGGCCAACGCTTCGGGACACTGCTTTTCATGTTGGTTGTTACGATCTTCCCACTCAACTTCAAGGTCTTTCGAGGAAAACCAAGTACGGTTTAGGTATGGGCTTAGGAATACCTGGAGCCTTGTGTATTATTGCGCTTGCATATTTGTTCTACGCCAAGATGAAGACACATGAGCAACAGAGGCTATCAAGAAGTGATTTTTCGACCATAATTTTACCGCGTCTTCCTGCTCAAATCATGGGATTGGATGCTGCTAGCATAGAAAAATACCCCAAAACCCTTCTTGGTGAAAGTGGGCGATTGCCTAAGCCTAATGACAATCTTTGTTCCATATGTCTCTGTGAATACCAGCCCAAGGAGACCTTGAGGACCATACCTGAATGCAATCACTATTTTCATGCCAATTGTATAGATGGATGGCTGAAGATGAATGCTACTTGTCCTCTGTGTCGCAATTTACCTGAAAGATCTGTTGCATCATTAACCCCGTCTATACCTGCATCTCCCACTTATTAG 1197 0.4745 MATVPPCILFLFLVALTSIGIAKAQFYCESISCGKGGVSIEFPFYLKESQIPGCGYPGFELSCANTTTEPLLTLPAEPGHFTVKLISLEDQQVWINDPQECLPKRLMRDRGLNLQRSPFQLSSAYSHVNYTFLRCPSNLTALSMVQPIPCLNSGFNSSSKSSVVAILSNPPFPTPWTSPCHVISWAMIPVAGFPWLFWTDYYSDIKLEWDNPNCGSCEARGGRCGFVGPTLRDTAFHVGCYDLPTQLQGLSRKTKYGLGMGLGIPGALCIIALAYLFYAKMKTHEQQRLSRSDFSTIILPRLPAQIMGLDAASIEKYPKTLLGESGRLPKPNDNLCSICLCEYQPKETLRTIPECNHYFHANCIDGWLKMNATCPLCRNLPERSVASLTPSIPASPTY* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g2285 398 ProSiteProfiles Zinc finger RING-type profile. 336 378 IPR001841 -
Amo03g2285 398 PANTHER RING-H2 FINGER PROTEIN ATL20-LIKE 10 395 - -
Amo03g2285 398 SMART ring_2 336 377 IPR001841 -
Amo03g2285 398 Pfam Wall-associated receptor kinase galacturonan-binding 28 97 IPR025287 GO:0030247
Amo03g2285 398 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 10 395 - -
Amo03g2285 398 SUPERFAMILY RING/U-box 331 380 - -
Amo03g2285 398 Pfam Ring finger domain 335 378 IPR001841 -
Amo03g2285 398 CDD RING-H2_PA-TM-RING 336 378 - -
Amo03g2285 398 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 303 382 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g2285 Amo-Chr3 95393982 95395852 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g2285 28 381 C3H Transcription Factor Family AT2G46495 34.722 3.98e-55 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g2285 - - adu:107479734 528.48