Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g2283 ATGGCTTCATCAGTATTAGTGGCCCGATTATGTTTACTGGTTGCCTTTGTATTCCATAATCTTCAAATCACAAGAAGCAAACAGGTTTGCGATGTGAAGTCATGCGGCGAAATCGAAGATATTCAGTTCCCATTCGGTTTGAAAGAAGCCAATCAAGAGCCTCAGTGCAGCTATTACCCTGACCCCAGTTTCCATCTCTTGTGCAAGCGCAGCAACCTCACTCAAACAATCCTCACTCTCCCCAAAACAGAGGACTTGGTAATCAAGAGCATCGATTACGAGGAACAAACCATCCAAGTCAACGATCCCAAAGGTTGTCTCCCAAAACGTTTCTTGCACAATAACTGGGACCTTTCGGATTCACCATTCACGCTCGACATCGCACGCTACAAATATTTCAATCTGACCTTCCTCAGTTGCCCCTCAAACTGGACCAAATCCACGGGGTCACCTAGAATCGCATGCCTCAGTGACAACACTGGAAACTCGGTCATAGTCTTAGGGCTGCGTCCTATTGACATGTCATCAACGTGTGACGTGATGTCCACGGCTCTTGTGCCGCTTCCGATGGTGGATATGCCTCAGTGGCCATTCTGGCCTGATCTCAACCACGATATTGGCTTGGCTTGGACCCAACCAAGGTGCTCCGAATGTGCGGTTAGTGGCCAACGTTGTGGCTTCGTCAACGATAAAACTTCTCGAGTTGGATGCTTTTCTACTCCCACCAAAAACCAAGGTCTTAGCAGCAGTGCCAAATATGGCTTAACCTTAGGAGTGGGAGTTCCCGGGCTCTTATGTTTAATTGGGCTTTCATGCTTCATTTGCGGTAAGGTCAAGGTTCGTATTCATCGCCGACAGCCCATCAGAGAGTTCCCAACAATTTCCCTACAGCCTATTACTCTTGCAATGGGCCTTGATAGGACCACAATTGAAAAGTACCCAAAGACTCTTATCGGTGAGAGCGGGCGCTTGTTGAAGCCCACTGATAATACCTGCTCAATATGCCTCTGTGAATATGAGCCTAAAGATACTTTGAGGACCATACCTGAGTGCAACCATTATTTCCATGCTGAGTGCATAGACGAGTGGCTCAGAATGAATGGAACCTGCCCCTTGTGCAGGAACACACCGGGGGCATTATCTAGAGTTAGCCCTTCTTTCTCTTCTTTGTCTCATCACACTTCATCAATGTCCTCTACGCCATAG 1206 0.4751 MASSVLVARLCLLVAFVFHNLQITRSKQVCDVKSCGEIEDIQFPFGLKEANQEPQCSYYPDPSFHLLCKRSNLTQTILTLPKTEDLVIKSIDYEEQTIQVNDPKGCLPKRFLHNNWDLSDSPFTLDIARYKYFNLTFLSCPSNWTKSTGSPRIACLSDNTGNSVIVLGLRPIDMSSTCDVMSTALVPLPMVDMPQWPFWPDLNHDIGLAWTQPRCSECAVSGQRCGFVNDKTSRVGCFSTPTKNQGLSSSAKYGLTLGVGVPGLLCLIGLSCFICGKVKVRIHRRQPIREFPTISLQPITLAMGLDRTTIEKYPKTLIGESGRLLKPTDNTCSICLCEYEPKDTLRTIPECNHYFHAECIDEWLRMNGTCPLCRNTPGALSRVSPSFSSLSHHTSSMSSTP* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g2283 401 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 400 - -
Amo03g2283 401 CDD RING-H2_PA-TM-RING 331 374 - -
Amo03g2283 401 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 298 378 IPR013083 -
Amo03g2283 401 Pfam Wall-associated receptor kinase galacturonan-binding 30 102 IPR025287 GO:0030247
Amo03g2283 401 Pfam Ring finger domain 330 374 IPR001841 -
Amo03g2283 401 SUPERFAMILY RING/U-box 331 376 - -
Amo03g2283 401 ProSiteProfiles Zinc finger RING-type profile. 332 374 IPR001841 -
Amo03g2283 401 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 400 - -
Amo03g2283 401 SMART ring_2 332 373 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g2283 Amo-Chr3 94509013 94511737 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g2283 42 380 C3H Transcription Factor Family AT2G25410 36.207 6.67e-57 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g2283 - - adu:107479323 592.808