Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g2274 ATGAAGGTGCCTAATAGTAACAATAAGAAGAACAAAACAGAGAATCCTCCGAGTTCAACTTCAAGCGATCATGCAAAGCAGAAGAAGGAGAAACTCGGGGAACGAATTGCAGCATTGCAACAGCTAGTTTCTCCCTTTGGGAAGACAGATACAGCTTCGGTTCTTCACGAGGCAATGGGCTACATAAGATTTCTCCATGACCAAGTTCAAGTGCTATGCTCCCCTTACTTGCAGATCTTGCCTTCTTCTTCTTCTCCTTCTTCATTTCAACATCAATGTATCCAAGTTTCAAGAAATTTCAAGAAACCACTGATAGTTAACACCGTCTCTAGTGAGAAAACTGGAGCAGTTACATGTTTCGGAAGAGTGACCTGTGCCATCATTTTTCCTGTGTTCAATCCTTTA 405 0.4173 MKVPNSNNKKNKTENPPSSTSSDHAKQKKEKLGERIAALQQLVSPFGKTDTASVLHEAMGYIRFLHDQVQVLCSPYLQILPSSSSPSSFQHQCIQVSRNFKKPLIVNTVSSEKTGAVTCFGRVTCAIIFPVFNPL 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g2274 135 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 21 78 IPR036638 GO:0046983
Amo03g2274 135 CDD bHLH_AtbHLH_like 25 72 IPR045239 -
Amo03g2274 135 PANTHER BASIC HELIX-LOOP-HELIX (BHLH) DNA-BINDING SUPERFAMILY PROTEIN-RELATED 7 80 - -
Amo03g2274 135 MobiDBLite consensus disorder prediction 1 31 - -
Amo03g2274 135 Gene3D - 19 79 IPR036638 GO:0046983
Amo03g2274 135 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 16 65 IPR011598 GO:0046983
Amo03g2274 135 Coils Coil 22 42 - -
Amo03g2274 135 MobiDBLite consensus disorder prediction 1 22 - -
Amo03g2274 135 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 7 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g2274 Amo-Chr3 94025045 94025858 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g2274 9 84 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31730 59.211 3.60e-25 92.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g2274 - - minc:123228365 112.849