Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g2234 ATGGAAAAGAAGGGAAAAATCATAGTATCAGTGGTTGTTTCGCTTTCGCTCATCCTTGTGGCGGGGGTTGCCACCGGGGTCATCGTGGCCGTTAATAACAAGAAAAGCAATGGCGCTGATGAAATGCAAAACACTAAAGAAAGGTTCACGAGTCTCATGTGCCGCAACACACAAGAGGATCAAAACCTCTGTCGCGAGGTTCTAAGCCAAGTTGATGGTTCCTCTTCTTCCGACCCAAAAGCATACATCGACACTGCCGTGAACGATATTAGAGACGGCGTCACCACCGCCCTAAAGATGATGACGACTGAGGAGGAGTTCTCTAAAGATGACAACGGAATCAAGATGGCCATTGATGGTTGCAAAGAAGTCATGGAGTCCGCATTGAGCAGCCTCGACCTTTTCAGCAATGTGCTTCACAGAAATCACGACATTAACTTTGTACAAACGCAAAGCCCCGACCTCAAGAACTGGCTTAGCGCCGTTATCTCATATCAGCAATCTTGTGTTGACATTTTTGAAGATCAAAATGAAGGAGAGAGAAAAATCAAAGAACAACTACAAAGCCAGAGTTTGGATCGTGTTGAGAAGGTTTCCATCATAACTCTCGATATTGTTACTGGTTTGGCTAAGATCATTGAAGATCTTGGTCTGCATGTGCAAATGAAACCCATTGCTTCTTCTAGGCGTGTTCTTCGCGAAGAGGTTGATAACGAGGGGTTCCCCGATTGGTTTTCCTCTTCAGATCGCAAGCTGTTGGCGAAGGATGTGAAGTTTCATGTTCCAAATGTAGTGGTTGCTAAAGATGGTAGTGGAAACTTTAGGACGATTCAGGATGCAATTAACTCGTACCCAAAGGCAAAGAATTTTCAGGGAAGGTACATTATCTATGTTAAGGCGGGGATCTATAAGGAGAATTGTACGGTTCCATCTCATGCAATAAACGTTTTCATGTATGGCGATGGCCCTACTAAGACCATTATCACTGCTAGTATGAGCAATGTCACCCACAACCTCAAGACCATGTTAACTGCCACTTTCGTGAATAAAGCGGGAATGTTTCTTGCGAAGGACATGAGGTTTGAGAATGCAGCTGGTGCAAAAGGGCACCAAGCAGTTGCACTAAGAAATGTGGGAGATTTTTCAGCTTTCTATAACTGTCACATACACGGTTATCAAGACACCTTGTATGTTCAAGCTAACAGGCAATTCTACCGCAACTGCGAAATCGCTGGAACAGTTGACTTTATCTTTGGTACATCTCCCGCCGTGATTCAGAGAAGCAAGCTCATCGTGAGGAAGCCCTTGCCAACTCAGTTCAATGTGTTGGTCGCAGATGGCACCGTCGAGAGGAACATGACTACTGGCATTGTGATTCAGGAATGCCAGATTGTTCCAGATCCAATGTTTGACTCTGTCAAGTACCAAATCAAGACTTATTTGGGTAGGCCATGGAAGGGAGGATCGAGAGCAGTAATCATGGAATCATATCTGGGTGACTGGATTAATCAGGAAGGGTGGGCCCCTCATGATGGCAATGAGATGAAAGGCTTCTTAGATATTTGTGAGTATGGAAACACCGGACCTGCTGCTTCAGTTCATGGAAGAATCAAGTGGAAGGGGTATCGTGGTATGATAACTAAGAATGAAGCCATGCGATTCACTGTTGCTGAATTCCTCAAGGGTGGACCTAACAATGGTGCTGACAGATGGTTGAACGCTCTTGGTGTTCCTTTTGACAGTGGTTTTCTAAGACCATAA 1761 0.4486 MEKKGKIIVSVVVSLSLILVAGVATGVIVAVNNKKSNGADEMQNTKERFTSLMCRNTQEDQNLCREVLSQVDGSSSSDPKAYIDTAVNDIRDGVTTALKMMTTEEEFSKDDNGIKMAIDGCKEVMESALSSLDLFSNVLHRNHDINFVQTQSPDLKNWLSAVISYQQSCVDIFEDQNEGERKIKEQLQSQSLDRVEKVSIITLDIVTGLAKIIEDLGLHVQMKPIASSRRVLREEVDNEGFPDWFSSSDRKLLAKDVKFHVPNVVVAKDGSGNFRTIQDAINSYPKAKNFQGRYIIYVKAGIYKENCTVPSHAINVFMYGDGPTKTIITASMSNVTHNLKTMLTATFVNKAGMFLAKDMRFENAAGAKGHQAVALRNVGDFSAFYNCHIHGYQDTLYVQANRQFYRNCEIAGTVDFIFGTSPAVIQRSKLIVRKPLPTQFNVLVADGTVERNMTTGIVIQECQIVPDPMFDSVKYQIKTYLGRPWKGGSRAVIMESYLGDWINQEGWAPHDGNEMKGFLDICEYGNTGPAASVHGRIKWKGYRGMITKNEAMRFTVAEFLKGGPNNGADRWLNALGVPFDSGFLRP* 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g2234 586 PANTHER PECTINESTERASE 12 583 - -
Amo03g2234 586 PANTHER PECTINESTERASE 12 583 - -
Amo03g2234 586 Gene3D Invertase/pectin methylesterase inhibitor family protein 47 210 IPR035513 -
Amo03g2234 586 Coils Coil 170 190 - -
Amo03g2234 586 TIGRFAM PME_inhib: pectinesterase inhibitor domain 39 207 IPR006501 GO:0004857
Amo03g2234 586 Pfam Pectinesterase 263 562 IPR000070 GO:0030599|GO:0042545
Amo03g2234 586 ProSitePatterns Pectinesterase signature 2. 410 419 IPR033131 -
Amo03g2234 586 Gene3D - 259 583 IPR012334 -
Amo03g2234 586 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 53 200 IPR035513 -
Amo03g2234 586 CDD PMEI-like_3 52 211 - -
Amo03g2234 586 SMART PMEI_2 45 205 IPR006501 GO:0004857
Amo03g2234 586 Pfam Plant invertase/pectin methylesterase inhibitor 53 204 IPR006501 GO:0004857
Amo03g2234 586 SUPERFAMILY Pectin lyase-like 263 580 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g2234 Amo-Chr3 90078223 90080340 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g2234 74 583 Carbohydrate Esterase AT4G33230 38.672 6.33e-112 345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g2234 K01051 - gmx:100815015 602.438