Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g2228 ATGGGACAAGAATCAGATTACAAAAGCCAACTGGTATTGGAGATTTGCTCAATTTCCACACGTTCTGTTGTATGTGTTCATAGACTTGTCCCTAACAAAACTAATAATCCACCTTTCATTGATTGGTACTGCATTCTTGGAGTGGCAGGAAATGCAGATGTAAATACAATCCGAAAGCAGTACCATAAACTTGCCTTGCAACTTCATCCTGATAAGAATAAGCATCCCAAGGCTGAAATTGCATTCAAGCTTCTATCTGAGGCATATGCATGTTTATCTGATGCAGCAAAAAGAAAAGCTTTTAACTTGGAGCGAAGCAAGAGTTTATGCATTGAGTGCAACAGAATCCCTAGCAATTCAAACAATAATAATGGATCTTCTTCAAGTTTCAAATCATCAAGGAGTAGTAGCATCAGCAGTAGTTCAAGATCATGTAAGCTTTGGCGAAACATCAATGACATAAGAGAAAGATTAAGGGAAGAAGCTAAGGTGATAGAGAAATGTTTGAGGGTAAATAATTCAGTGCCAACAAAGAATTATGATGATGATTATATGCATAGAAGTAGAGGGCCTAATAACAATAATAATAAGCATAGAGTTGAGAAAGAAACACCAGTTTTCAATCCATCAAATTACTTGTACCAAGGGTACCCTCATAGGAGAAATCATGTTAACAAGGATTATTCTGAGAAATTTTGGTACTTGCAGCAAGAAACTAATGCAGTGCATAGTAATAACTATTCCAAGGGAGGATCAGATAAGCTTTCTTCACCAGTTTTTGAGGTTGAAACACAGAGGAGCATGTTCAGTAGAAAATTTGGTCCTATCCCCTCACAATGTTAG 843 0.3689 MGQESDYKSQLVLEICSISTRSVVCVHRLVPNKTNNPPFIDWYCILGVAGNADVNTIRKQYHKLALQLHPDKNKHPKAEIAFKLLSEAYACLSDAAKRKAFNLERSKSLCIECNRIPSNSNNNNGSSSSFKSSRSSSISSSSRSCKLWRNINDIRERLREEAKVIEKCLRVNNSVPTKNYDDDYMHRSRGPNNNNNKHRVEKETPVFNPSNYLYQGYPHRRNHVNKDYSEKFWYLQQETNAVHSNNYSKGGSDKLSSPVFEVETQRSMFSRKFGPIPSQC* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g2228 280 MobiDBLite consensus disorder prediction 121 140 - -
Amo03g2228 280 SUPERFAMILY Chaperone J-domain 37 103 IPR036869 -
Amo03g2228 280 Pfam DnaJ domain 41 102 IPR001623 -
Amo03g2228 280 ProSiteProfiles dnaJ domain profile. 41 105 IPR001623 -
Amo03g2228 280 MobiDBLite consensus disorder prediction 179 200 - -
Amo03g2228 280 SMART dnaj_3 40 97 IPR001623 -
Amo03g2228 280 PANTHER BNAC03G44070D PROTEIN 4 271 - -
Amo03g2228 280 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 4 271 - -
Amo03g2228 280 PRINTS DnaJ domain signature 43 61 IPR001623 -
Amo03g2228 280 PRINTS DnaJ domain signature 61 76 IPR001623 -
Amo03g2228 280 PRINTS DnaJ domain signature 77 97 IPR001623 -
Amo03g2228 280 MobiDBLite consensus disorder prediction 180 200 - -
Amo03g2228 280 CDD DnaJ 41 94 IPR001623 -
Amo03g2228 280 ProSitePatterns Nt-dnaJ domain signature. 82 101 IPR018253 -
Amo03g2228 280 Gene3D DnaJ domain 40 163 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g2228 Amo-Chr3 89429413 89430825 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g2228 32 102 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 40.000 1.33e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g2228 - - adu:107483537 536.954