Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g2212 ATGACGTCACGTCCAGATAATGGTGGTCATGCGACCAACAGCGGAAGGACACGTGTCGGCAAGTACGAGCTGGGTAGGACGCTAGGCGAGGGGAATTTCGCGAAAGTGAAGTTTGCGAAGAACACGATCACCGGAGACAATGTCGCCATTAAGATTCTCGACAAGGAGAAAGTTCTCAAGCACAAGATGATCAACCAGATAAAACGAGAGATATCAACAATGAAACTGATTAGACACCCTAATGTAATACGTATGTATGAGGTCATGGCTAGCAAGACAAAAATATACATTGTATTGGAATTTGTAACTGGTGGAGAGCTCTTTGATAAAATTGCAAGCAGTGGGAGATTGAAAGAAGAAGAAGCTAGAAGATATTTTCAACAGCTAATATGTGCTGTGGATTACTGTCATAGTAGAGGTGTTTGCCATAGAGACCTAAAGCCTGAGAACTTGTTGCTGGATGCTACGGGAATGCTCAAAGTATCAGATTTTGGATTGAGTGCACTGCCTCAACAAGTTCGGGAAGATGGGCTGCTTCATACAACATGTGGTACGCCAAATTATGTTGCCCCAGAGGTGGTTCACAATAAAGGCTATGATGGTGCGAAGGCTGATCTCTGGTCATGTGGTGTCATTCTTTTTGTTTTGATGGCAGGCTATTTGCCCTTTGAAGACAACAATCTTGTGAATTTGTATAAAAAGATTTTCAAGGCTGAGTTCACTTGTCCTCCTTGGTTTTCTACGAATGCAAAGAAGTTAATCATAAGAATACTTGAACCTGATCCTGCCAAACGGATTACGATCGCTGATGTAATTGAGAATGAATGGTTCAAGAAGGGATACAAGCCTCCAAAATTTGAGCAGGCCAATGTTAGTCTTGATGATATAGATTCTATTTTTAGTGAATCAATGGATTCACAAAACCTTGTTTCTGAGAGGCGTGAAACAAGGCCTGTGGAACCTGTGACCATGAATGCTTTTGAGCTTATCTCTACCTCTCAGGGCCTCAATCTCCGTAGTCTTTTCGAGAAACAAATGGGACTTGTTAAAAGGGAAACAAGATTCACATCCAAATGTTCAGCAAATGAGATCATTACGAAAATTGAGGAAGCTGCTGGGCCTTTGGGTTTCGGTGTTAAGAAGAGCAACAATAAGTTAAAGATTCAAGGTGAAAAGACTGGGCGTAAAGGTCAACTATCTGTAGCTACCGAGATTTTTGAGGTGGCTCCTGAACTTTATGTGGTTGAATTGCGGAAGGCTGAGGGAGATACTCTGGAATTTCACAAATTCTATAAAAACCTCTCTCCTGCACTGAAAGATATTGTTTGGAAAGCAGAGCCAATCGATGAAGAAAAAGATGGTTCCAGTCCCTCAAAATAA 1380 0.4167 MTSRPDNGGHATNSGRTRVGKYELGRTLGEGNFAKVKFAKNTITGDNVAIKILDKEKVLKHKMINQIKREISTMKLIRHPNVIRMYEVMASKTKIYIVLEFVTGGELFDKIASSGRLKEEEARRYFQQLICAVDYCHSRGVCHRDLKPENLLLDATGMLKVSDFGLSALPQQVREDGLLHTTCGTPNYVAPEVVHNKGYDGAKADLWSCGVILFVLMAGYLPFEDNNLVNLYKKIFKAEFTCPPWFSTNAKKLIIRILEPDPAKRITIADVIENEWFKKGYKPPKFEQANVSLDDIDSIFSESMDSQNLVSERRETRPVEPVTMNAFELISTSQGLNLRSLFEKQMGLVKRETRFTSKCSANEIITKIEEAAGPLGFGVKKSNNKLKIQGEKTGRKGQLSVATEIFEVAPELYVVELRKAEGDTLEFHKFYKNLSPALKDIVWKAEPIDEEKDGSSPSK* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g2212 459 Gene3D Phosphorylase Kinase; domain 1 11 101 - -
Amo03g2212 459 SMART serkin_6 22 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo03g2212 459 ProSiteProfiles Protein kinase domain profile. 22 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo03g2212 459 CDD CIPK_C 325 440 - -
Amo03g2212 459 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 16 449 - -
Amo03g2212 459 Pfam Protein kinase domain 22 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo03g2212 459 CDD STKc_SnRK3 21 276 - -
Amo03g2212 459 Gene3D Kinase associated domain 1, KA1 319 444 - -
Amo03g2212 459 Gene3D Transferase(Phosphotransferase) domain 1 102 284 - -
Amo03g2212 459 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672|GO:0006468
Amo03g2212 459 Pfam NAF domain 321 381 IPR004041 GO:0007165
Amo03g2212 459 ProSitePatterns Protein kinases ATP-binding region signature. 28 51 IPR017441 GO:0005524
Amo03g2212 459 ProSiteProfiles NAF domain profile. 319 343 IPR018451 GO:0007165
Amo03g2212 459 SUPERFAMILY Protein kinase-like (PK-like) 19 324 IPR011009 -
Amo03g2212 459 PANTHER SERINE/THREONINE KINASE 16 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g2212 Amo-Chr3 88280235 88287895 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g2212 11 452 CBL-interacting serine-threonine protein kinases AT1G01140 69.866 0.0 657
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Amo03g2212 Pkinase 6.5e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g2212 - - gmx:100788746 783.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g3239 01 104467749 104470349 Amo03g2212 03 88280235 88287895 PCT