Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g2207 ATGCTGTTTTTGCGGTTGAAAGACACAATGTTTGATACGAGAGTGGAGGAAGATGCTGAGTTATCCGATTGGGAAGGAAGGGGGGCTTCAATGTTGCCCGGATTTTTGGGTTTGGATGGGTTGCGAGCAGAAGATGTTCTTGAAATGGAGTTCTCTTCACCTCAGGAGGCAGGCGGCTTCTATAACAATTACAGCCGACTAAAGGGCTTTGCATCACGGCGAGGCAAGACKGTTAGAAACACTGCCGGAGAGATCGTGCGGTACACTTTTGTTTGTAATAGGCAAGGATTTCGAGAGAAGAAATGGTTGGAAAAGGTTGATCGCAAAAGGGAGCATAAGGTAGTAACCCGATGCGGATGCATGGCGGAGATGAGGATAAAGAGGAAAGATGGTAGTGGGAGGTGGTATGTCTCGCGTTTTGTCGAGGAGCATAACCACGAACTTGCGTATGAGAAGCTTGTTGATTATCTGCGGTCACACAGGAAGATATCTGAGGTAGAAGTTGCTCAACTAACAAGCATGAGGGAGATTGGTTTTAGCATACCTAAGATTTATGAGTCTTTCGCAGCACAACTAGGGGGTTTTAATCTGGTAACATTCACAAAGCAAGATATGTGTGTGGATTTTCTACGTGACACCGAGGACGAGCTAGAATTTCGTTCATGGTACGGAACACCTGTGCTACAAACAGAGTTTGTTGAGTTGGAAAAGTTCGGGTGGACGATGTTCACCCGTGAAATGTTTCTCAGATTCCGGGATAGCCTGAAACGGTGTGTTCGCGTTAGAATATGTGAAATTAATGACACTAAGAACCCTCATGCATACACTCTCCAGAAGTATCGAAGGCCTGAGATGAATTGGAAGGTTTATAGGGACCCTGTCGCGAACAGATTTACTTGCACCTGCATGCGTATGGAGTCGTTTGGTCTTCCTTGTGTGCATATCCTTTCCGTGTGTGTTAGGCTTGACTTAATGGAAATCCCTGAAAGCCTAGTGCTGCGCAGGTGGTCTAAGGCAGCCAAAATGGAGGTCCATAACCAATGTGTTGAGCAACACACTGCTGACCGAAGTATGACCTATAGGACACGATTGGGTGCTTTCTCCCAGCTATGTAAGCGTTTAGGGCGCGTTGCTTGCATGAGTGATGAAGACTTCAAGCTTTACTCAAATAAGCTTCTGAGTGATGCTTTCTTCCTTGAAATAAAGAACGGCCTCAGACCATCAACGGATGATATCACAGCAGCACAAGATTGCGGGGTGAAGGACCCGATTCGTGTTAGAACAAAAGGCACAGGTCGGATGAGTCAAGCATGTGGGTCTGCCCCGAAAACCAAAAGAAAGTGCAGCACATGCGGGAAGCTAGGGCACCGGAGGACTAGATGCCCCAACGGAGGCGCGCAACCTTCACCAAGGAATGATAAATCACCTGTTGGGATAAATAAACGCAAGCGATCAAAGGTTACCACGTTACTTATTCCTGCATGGACTTTTTACTATGACACGTTACCAATAAAACTAACTCTATAA 1527 0.463 MLFLRLKDTMFDTRVEEDAELSDWEGRGASMLPGFLGLDGLRAEDVLEMEFSSPQEAGGFYNNYSRLKGFASRRGKTVRNTAGEIVRYTFVCNRQGFREKKWLEKVDRKREHKVVTRCGCMAEMRIKRKDGSGRWYVSRFVEEHNHELAYEKLVDYLRSHRKISEVEVAQLTSMREIGFSIPKIYESFAAQLGGFNLVTFTKQDMCVDFLRDTEDELEFRSWYGTPVLQTEFVELEKFGWTMFTREMFLRFRDSLKRCVRVRICEINDTKNPHAYTLQKYRRPEMNWKVYRDPVANRFTCTCMRMESFGLPCVHILSVCVRLDLMEIPESLVLRRWSKAAKMEVHNQCVEQHTADRSMTYRTRLGAFSQLCKRLGRVACMSDEDFKLYSNKLLSDAFFLEIKNGLRPSTDDITAAQDCGVKDPIRVRTKGTGRMSQACGSAPKTKRKCSTCGKLGHRRTRCPNGGAQPSPRNDKSPVGINKRKRSKVTTLLIPAWTFYYDTLPIKLTL* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g2207 508 MobiDBLite consensus disorder prediction 459 482 - -
Amo03g2207 508 ProSiteProfiles Zinc finger SWIM-type profile. 290 323 IPR007527 GO:0008270
Amo03g2207 508 SUPERFAMILY Retrovirus zinc finger-like domains 427 465 IPR036875 GO:0003676|GO:0008270
Amo03g2207 508 SMART 26again6 298 325 IPR006564 GO:0008270
Amo03g2207 508 Pfam FAR1 DNA-binding domain 60 149 IPR004330 -
Amo03g2207 508 ProSiteProfiles Zinc finger CCHC-type profile. 446 463 IPR001878 GO:0003676|GO:0008270
Amo03g2207 508 PANTHER PROTEIN FAR1-RELATED SEQUENCE 5-LIKE 219 360 - -
Amo03g2207 508 PANTHER PROTEIN FAR1-RELATED SEQUENCE 5-LIKE 39 165 - -
Amo03g2207 508 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 219 360 IPR031052 GO:0006355
Amo03g2207 508 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 39 165 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g2207 Amo-Chr3 87504970 87508695 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo03g2207 FAR1 2.4e-21 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g2207 - - aip:107620408 560.066