Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g2178 CCATTGGACTTCTCCTGCAGCATTGCAAGTTGGAGCTTCGAAGCTCACTCACTCACTCCTGCTCGTGCAGCTAACGATTCAGCAGTGGAAGCACAGTTGCCAAGCTTGCCTCCTGCCTCCATTGCGAAGCTCTGTTCCACCGTCAATGGCGCCATCTCTGTTCCACCGGTCAGCGCTGCTCCCCCTCTTGCTAAGGATCTGCTCTGTTCTATGCTTCTATCTTCTAGATGGTGTTGTGATCAATATGGTTGTTGGTGGGGAAGTGGTCGAAACGCAAAGCAATTTCCATCGCTGAAAAGGCTTGAACTAGAGAATCTGTTTGATGGGATGTCTCTCCATGAGTTAGCAATGTTTATACTAAAAGAGCGCAAATACACTGCAAAGTATAATGATGATCTATGCGTTGTCTGTTGGGATGGGGGAACCTGCTGCTCTGTGATGGATGCCCAAGGTCGTTTCACAAAGAATGTGCGTCAGTATCAAGTATTCCTCGTGGTAATTGGTATTGTCAAATCTGCCAAAACATGTTCCAAAGAGAAAGTTTTGTTGCAGACAATGTCCATGCTGTGGCAGCAGAAAGGGTTGAAGGAGTTGGTCCCATTGAACAGATTGCCAGATATTGCATTGAAGGCCCCATGTGAAAAGGAATACCATGTTGGTTGTTTGAGGGATCATAAGATGGCATTTTTAAAGGAGTTTCCAGAAGGGATTTGGATTTGCTCTTCCGGAATCTCTCTTGGATGTAATAAAGGTGAAGAATGTTTTGATGCTATTATTGATCCAGTTAGAGATTACTTGAATGTTTTGAACTTAGCCACCACTGCCTTCTTCTTTTTCACCGTTGTGTGCCGTATCAAACGTGCCAAAGAATTGGAAAATGTCAACACAAGACATCCTCAGTTGTTGTATGAGTCCAAGTTGTACAAGATTCTCCAGGAAAAAAGTTCAAGTTTCCGAGATAGAAGATATGAATATAAAGGCCTTAATAAGGTTTGGAAGGGAAAACTACCAGAAGCTAAGGCCAATGGAAATCCTATGAAGATCCAGGAAGCACAAATATGGATTATATTTATAGGCTTGTTCATGGTCAGGTTACTATGGTCAATACATTTTTATGTTAGGTTTCATTTGGTTTGA 1137 0.4274 PLDFSCSIASWSFEAHSLTPARAANDSAVEAQLPSLPPASIAKLCSTVNGAISVPPVSAAPPLAKDLLCSMLLSSRWCCDQYGCWWGSGRNAKQFPSLKRLELENLFDGMSLHELAMFILKERKYTAKYNDDLCVVCWDGGTCCSVMDAQGRFTKNVRQYQVFLVVIGIVKSAKTCSKEKVLLQTMSMLWQQKGLKELVPLNRLPDIALKAPCEKEYHVGCLRDHKMAFLKEFPEGIWICSSGISLGCNKGEECFDAIIDPVRDYLNVLNLATTAFFFFTVVCRIKRAKELENVNTRHPQLLYESKLYKILQEKSSSFRDRRYEYKGLNKVWKGKLPEAKANGNPMKIQEAQIWIIFIGLFMVRLLWSIHFYVRFHLV* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g2178 378 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 120 263 IPR013083 -
Amo03g2178 378 PANTHER AUTOIMMUNE REGULATOR 108 142 - -
Amo03g2178 378 PANTHER AUTOIMMUNE REGULATOR 212 242 - -
Amo03g2178 378 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 212 242 - -
Amo03g2178 378 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 108 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g2178 Amo-Chr3 85035561 85042823 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g2178 317 356 Core DNA Replication Machinery Family AT1G08260 77.500 7.90e-13 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g2178 - - adu:107478584 100.908