Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g2168 ATGGATCGAGGAAGAAGAGTTCCTTCTCAGAAAAACTTGTGCAAGCATTATAGGAGGAGATGCAAGATTCGTGCACCTTGCTGCAATGAGATCTACCCCTGCCGCCATTGCCATAACGAGGCTGCGAGCTTGTTGAGGAACCCCTATGATCGCCACGAACTTGTTCGCCAAGATGTTAAACAAGTTGTTTGTGCAGTTTGTGACACTGAGCAGCCGGTCGCTCAAGTTTGCACAAACTGTGGAGTTAGAATGGGAGAGTATTTCTGTGACATCTGCAAATTCTTCGATGATGATATAGGGAAACAACAGTTTCATTGTGATGATTGTGGAATCTGTAGGGTTGGTGGTCAAGAGAATTTTTTCCACTGCGAGAAGTGTGGGTCATGCTATTCAGTTACACTGCGTGACAATCATTTGTGTGTGGAGAACTCCATGAGGCACCACTGCCCCATTTGTTACGAGTTCCTTTTTGATTCAATGAAAGACATCAGTGTCATGAAATGTGGTCACACCATGCACCATGAATGCTTTGAAGAGATGCTAAATCGCGACACGTACTGCTGTCCCATATGCTCCAAGTCAGTGATGGACATGACCAGGACATGGAAGAGAATTGATGAAGAGATTGAAGCAACTGTCATGCCCGAAGATTATCGGCATAGGAAGGTTTGGATATTATGCAATGACTGCAATGACACAACAGAAGTGTTCTTCCACATTCTGGGGCAAAAATGTGGTCACTGCCAATCGTATAATACGCGTGCAATCGCTCCTCCGGTTCTTCCTCAATGA 792 0.4508 MDRGRRVPSQKNLCKHYRRRCKIRAPCCNEIYPCRHCHNEAASLLRNPYDRHELVRQDVKQVVCAVCDTEQPVAQVCTNCGVRMGEYFCDICKFFDDDIGKQQFHCDDCGICRVGGQENFFHCEKCGSCYSVTLRDNHLCVENSMRHHCPICYEFLFDSMKDISVMKCGHTMHHECFEEMLNRDTYCCPICSKSVMDMTRTWKRIDEEIEATVMPEDYRHRKVWILCNDCNDTTEVFFHILGQKCGHCQSYNTRAIAPPVLPQ* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g2168 263 Gene3D - 223 258 - -
Amo03g2168 263 ProSiteProfiles Zinc finger RING-type profile. 149 192 IPR001841 -
Amo03g2168 263 ProSiteProfiles Zinc finger CTCHY-type profile. 84 148 IPR017921 -
Amo03g2168 263 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 14 263 - -
Amo03g2168 263 SUPERFAMILY Zinc hairpin stack 85 142 IPR037275 -
Amo03g2168 263 Pfam Zinc-ribbon 196 254 IPR039512 -
Amo03g2168 263 SUPERFAMILY RING/U-box 148 197 - -
Amo03g2168 263 SMART ring_2 149 191 IPR001841 -
Amo03g2168 263 SUPERFAMILY CHY zinc finger-like 11 83 IPR037274 GO:0008270
Amo03g2168 263 ProSiteProfiles Zinc finger CHY-type profile. 7 82 IPR008913 GO:0008270
Amo03g2168 263 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 136 222 IPR013083 -
Amo03g2168 263 Pfam CHY zinc finger 14 94 IPR008913 GO:0008270
Amo03g2168 263 Pfam Ring finger domain 148 191 IPR001841 -
Amo03g2168 263 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MIEL1-LIKE ISOFORM X1 14 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g2168 Amo-Chr3 83334989 83338035 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g2168 14 262 C2H2 Transcription Factor Family AT3G18290 40.551 2.19e-54 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g2168 K10144 - gmx:100792038 500.36