Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g2166 ATGAAAGGTGATAGCGAGTGTGGTGGTTCTTCAATGCCGGCGGAGCGTAACAGAAGGCTGAAGATGAATCGCCTGTTCAGTCAGCTTCAGGCCACCATCCCACGCCCCCTTTCCAAGGCTACAAAGGAAGTGATTATAACGGAAACGATTAGGTACATAAAGGAGCTTGAGAGGAAGAAGAACAACTTGGAGCAGATCAAGGAACTACAAATTCAAAGTCATGCCAGTGGTACCACCTTCATGCTTCCATGCATGGCCAATGATGATAATTGCTCTGTCACTGTCACTGTCTCCGCCAACGTCGCATTTTTCGGCATTCAGACCGTGGCTCGCCGAGGTTTGATTACCATGATTTTGGAGGTGTTCAGCAACCACAAGGCTGAGATTTTGGCTGCAAATGTGGCGGTTAATGAAGGGATTTTGACATTTGCAGTCACTGCTCTATTGCAAATTGTTGCTGATGGGGAAGGAGAAGGAGAAGGGGCTGTTGAGATGATTAAGAGAGAGATCATGACTTTGTAG 522 0.4713 MKGDSECGGSSMPAERNRRLKMNRLFSQLQATIPRPLSKATKEVIITETIRYIKELERKKNNLEQIKELQIQSHASGTTFMLPCMANDDNCSVTVTVSANVAFFGIQTVARRGLITMILEVFSNHKAEILAANVAVNEGILTFAVTALLQIVADGEGEGEGAVEMIKREIMTL* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g2166 173 CDD bHLH_SF 15 58 - -
Amo03g2166 173 SMART finulus 12 62 IPR011598 GO:0046983
Amo03g2166 173 Coils Coil 46 73 - -
Amo03g2166 173 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 9 171 - -
Amo03g2166 173 Pfam Helix-loop-helix DNA-binding domain 14 57 IPR011598 GO:0046983
Amo03g2166 173 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 9 171 - -
Amo03g2166 173 Gene3D - 12 77 IPR036638 GO:0046983
Amo03g2166 173 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 14 78 IPR036638 GO:0046983
Amo03g2166 173 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 56 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g2166 Amo-Chr3 83329504 83330114 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g2166 8 145 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 27.108 7.65e-06 42.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo03g2166 HLH 1.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g2166 - - ahf:112704712 311.997